| Volume 1 Pathogen Detection and Identification |
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xv | |
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xvii | |
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3 | (9) |
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1.1 Concepts and Implications of Pathogen Infection of Seeds and Propagules |
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3 | (1) |
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1.2 Economic Importance of Seed- and Propagule-Borne Microbial Pathogens |
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4 | (2) |
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1.3 Nature of Seed- and Propagule-Borne Microbial Pathogens |
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6 | (2) |
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1.4 Development of Crop Disease Management Systems |
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8 | (1) |
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9 | (3) |
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2 Detection and Identification of Fungal Pathogens |
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12 | (122) |
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2.1 Detection and Differentiation of Fungal Pathogens in Seeds |
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12 | (74) |
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2.1.1 Conventional/Isolation-Dependent Methods |
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13 | (6) |
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2.1.1.1 Dry Seed Examination |
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14 | (1) |
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2.1.1.2 Histological and Cytological Methods |
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15 | (1) |
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2.1.1.3 Seed Washing Test |
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16 | (1) |
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16 | (2) |
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18 | (1) |
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2.1.2 Isolation-Independent Methods |
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19 | (5) |
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2.1.2.1 Grow-Out/Seedling Symptom Test |
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19 | (1) |
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20 | (2) |
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22 | (2) |
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24 | (4) |
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2.1.4 Nucleic Acid-Based Techniques |
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28 | (58) |
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2.1.4.1 Hybridization-Based Nucleic Acid Techniques |
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28 | (1) |
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2.1.4.2 PCR-Based Techniques |
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29 | (30) |
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2.1.4.3 Combination of PCR-Based Assays with Other Techniques |
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59 | (2) |
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2.1.4.4 Reverse-Transcription (RT) Polymerase Chain Reaction |
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61 | (1) |
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2.1.4.5 Random Amplified Polymorphic DNA Technique |
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61 | (6) |
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2.1.4.6 Amplified Fragment Length Polymorphism |
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67 | (3) |
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2.1.4.7 Restriction Fragment Length Polymorphism |
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70 | (5) |
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2.1.4.8 DNA Sequence Analysis |
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75 | (4) |
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2.1.4.9 Phylogenetic Analysis |
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79 | (1) |
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2.1.4.10 DNA Array Technology |
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80 | (1) |
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2.1.4.11 Matrix-Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry |
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81 | (1) |
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2.1.4.12 Biochemical Methods |
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81 | (3) |
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2.1.4.13 Assessment of Variations in Biological Characteristics of Fungal Pathogens |
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84 | (2) |
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2.2 Detection and Differentiation of Fungal Pathogens in Propagules |
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86 | (18) |
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2.2.1 Conventional/Isolation-Dependent Methods |
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87 | (1) |
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2.2.2 Isolation-Independent Methods |
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88 | (14) |
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88 | (2) |
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2.2.2.2 Nucleic Acid-Based Techniques |
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90 | (11) |
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2.2.2.3 Loop-Mediated Isothermal Amplification |
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101 | (1) |
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2.2.3 Techniques Based on Biological Characteristics of Fungal Pathogens |
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102 | (2) |
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2.2.3.1 Vegetative Compatibility Groups |
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102 | (2) |
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104 | (8) |
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2.3.1 Alkaline Blotter Method |
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104 | (1) |
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2.3.2 Detection of Teliospores of Tilletia indica in Seed by Acid Electrolyzed Water |
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104 | (1) |
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2.3.2.1 Preparation of Acid Electrolyzed Water and Sodium Hypochlorite Solutions |
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104 | (1) |
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2.3.2.2 Assessment of Effectiveness of AEW and NaOCl |
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104 | (1) |
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2.3.3 Detection of Sporisorium reilianum and Ustilago maydis by Dot-Blot Hybridization |
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105 | (1) |
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2.3.3.1 Isolation of Smut Pathogens |
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105 | (1) |
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2.3.3.2 Nucleic Acid Hybridization |
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105 | (1) |
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2.3.4 Detection of Phoma ligulicola in Pyrethrum Seed by Polymerase Chain Reaction |
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106 | (1) |
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2.3.4.1 Isolation of the Pathogen |
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106 | (1) |
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2.3.4.2 Extraction of Pathogen DNA |
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106 | (1) |
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2.3.4.3 PCR Amplification |
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106 | (1) |
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2.3.5 Detection of Plasmopara halstedii in Sunflower Seed by Optimized Duplex Real-Time PCR Assay |
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106 | (1) |
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2.3.5.1 Preparation of P. halstedii-Infected Seed Materials |
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106 | (1) |
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2.3.5.2 Optimized Duplex qPCR Assay |
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107 | (1) |
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2.3.6 Detection of Colletotrichum lindemuthianum in Common Bean Seed by PCR Assay |
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107 | (1) |
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2.3.6.1 Extraction of Pathogen DNA |
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107 | (1) |
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2.3.6.2 Seed Powder Preparation |
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107 | (1) |
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2.3.6.3 PCR Amplification |
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107 | (1) |
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2.3.7 Detection of Alternaria brassicae by Conventional and Real-Time PCR Assays in Radish Seeds |
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108 | (1) |
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2.3.7.1 Seed Sample Preparation |
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108 | (1) |
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108 | (1) |
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2.3.8 Assessment of Genetic Diversity of Fusarium fujikuroi by UP-PCR Analyses |
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109 | (1) |
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2.3.8.1 Extraction of DNA from Pathogen Mycelium |
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109 | (1) |
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2.3.8.2 UP-PCR Amplification |
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109 | (1) |
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2.3.9 Detection and Quantification of Veriticillium dahliae in Spinach Seed by Real-Time PCR Assay |
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110 | (1) |
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2.3.9.1 Extraction of Pathogen DNA from Infected Spinach Seed |
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110 | (1) |
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2.3.9.2 Quantitative PCR Assay |
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110 | (1) |
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2.3.10 Assessment of Variation Among Isolates of Fusarium graminearum Using Random Amplified Polymorphic DNA (RAPD) |
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111 | (1) |
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2.3.11 Differentiation of Tilletia spp. by PCR-RFLP Technique |
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111 | (24) |
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2.3.11.1 Extraction of Pathogen DNA |
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111 | (1) |
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2.3.11.2 PCR Amplification |
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111 | (1) |
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2.3.11.3 DNA Sequencing and Analysis |
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112 | (1) |
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112 | (22) |
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3 Biology of Fungal Pathogens |
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134 | (40) |
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3.1 Biological Characteristics |
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135 | (9) |
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3.1.1 Disease Cycles of Fungal Pathogens |
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135 | (8) |
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3.1.1.1 Reproduction of Fungal Pathogens |
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135 | (1) |
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3.1.1.2 Survival and Dispersal of Fungal Pathogens |
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136 | (7) |
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3.1.2 Host Range of Fungal Pathogens |
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143 | (1) |
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3.2 Physiological Characteristics of Fungal Pathogens |
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144 | (3) |
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3.2.1 Variations in Virulence of Fungal Pathogens |
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144 | (3) |
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3.3 Genotypic Characteristics of Fungal Pathogens |
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147 | (18) |
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3.3.1 Pathogenicity of Fungal Pathogens |
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147 | (2) |
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3.3.2 Production of Mycotoxins by Fungal Pathogens |
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149 | (8) |
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3.3.3 Production of Enzymes and Other Compounds by Fungal Pathogens |
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157 | (3) |
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3.3.4 Sensitivity of Fungal Pathogens to Fungicides |
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160 | (5) |
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3.4 Influence of Storage Conditions |
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165 | (1) |
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166 | (1) |
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3.5.1 Isolation of Fusarium oxysporum f. sp. vasinfectum from Cotton Seed |
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166 | (8) |
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3.5.1.1 Fusarium Selective Liquid Medium |
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166 | (1) |
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3.5.1.2 Isolation of the Pathogen |
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166 | (1) |
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166 | (8) |
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4 Process of Infection by Fungal Pathogens |
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174 | (46) |
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4.1 Invasion Paths of Seedborne Fungal Pathogens |
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174 | (33) |
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4.1.1 Direct Infection of Floral Parts |
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174 | (16) |
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4.1.2 Infection Through Inoculum in Soil/Plant Residues |
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190 | (7) |
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4.1.3 Infection Through Inoculum Present in Seed-Bearing Organs |
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197 | (4) |
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4.1.4 Role of Enzymes and Toxins in Pathogenesis |
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201 | (6) |
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4.2 Invasion Paths of Propagule-Borne Fungal Pathogens |
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207 | (3) |
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210 | (10) |
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5 Detection and Identification of Bacterial and Phytoplasmal Pathogens |
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220 | (155) |
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5.1 Detection and Identification of Bacterial Pathogens |
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220 | (53) |
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5.1.1 Detection of Bacterial Pathogens in Seed |
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220 | (2) |
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5.1.2 Conventional/Isolation-Dependent Methods |
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222 | (4) |
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5.1.2.1 Isolation of Bacterial Pathogens |
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222 | (3) |
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5.1.2.2 Bacteriophage Typing |
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225 | (1) |
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5.1.3 Isolation-Independent Methods |
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226 | (3) |
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5.1.3.1 Seedling Grow-Out Assay |
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226 | (1) |
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5.1.3.2 Biochemical Methods |
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227 | (1) |
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5.1.3.3 Physical Techniques |
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228 | (1) |
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229 | (13) |
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5.1.4.1 Agglutination-/Diffusion-Based Tests |
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230 | (1) |
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5.1.4.2 Immunofluorescence Microscopy |
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231 | (1) |
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5.1.4.3 Enzyme-Linked Immunosorbent Assay |
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232 | (5) |
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5.1.4.4 Immunomagnetic Separation of Bacterial Pathogens |
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237 | (1) |
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5.1.4.5 Immunolabeling and Electron Microscopy |
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238 | (2) |
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240 | (2) |
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5.1.5 Nucleic Acid-Based Assays |
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242 | (31) |
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5.1.5.1 Nucleic Acid Hybridization Methods |
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242 | (1) |
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5.1.5.2 Restriction Fragment Length Polymorphism |
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243 | (1) |
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244 | (10) |
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5.1.5.4 Real-Time Polymerase Chain Reaction Assay |
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254 | (7) |
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5.1.5.5 Integration of PCR with Other Detection Methods |
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261 | (9) |
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5.1.5.6 Assessment of Genetic Diversity of Bacterial Pathogens |
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270 | (3) |
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5.2 Detection of Bacterial Pathogens in Propagules |
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273 | (53) |
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5.2.1 Conventional/Biological Methods |
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273 | (2) |
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275 | (1) |
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276 | (1) |
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5.2.4 Physical Techniques |
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276 | (2) |
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278 | (4) |
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5.2.6 Nucleic Acid-Based Techniques |
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282 | (44) |
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5.2.6.1 Nucleic Acid Hybridization Methods |
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282 | (1) |
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5.2.6.2 PCR-Based Methods |
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283 | (35) |
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5.2.6.3 Loop-Mediated Isothermal Amplification Technique |
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318 | (3) |
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5.2.6.4 Cycleave Isothermal and Chimeric Primer-Initiated Amplification of Nucleic Acids |
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321 | (1) |
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5.2.6.5 DNA Array Technology |
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322 | (3) |
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5.2.6.6 Nucleic Acid-Based Amplification Assay |
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325 | (1) |
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5.3 Detection of Phytoplasmal Pathogens |
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326 | (17) |
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328 | (2) |
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5.3.2 Nucleic Acid-Based Techniques |
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330 | (13) |
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5.3.2.1 Hybridization Techniques |
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330 | (1) |
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5.3.2.2 Polymerase Chain Reaction Techniques |
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330 | (13) |
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5.3.2.3 Loop-Mediated Isothermal Amplification Assay |
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343 | (1) |
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343 | (9) |
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5.4.1 General/Semiselective Media for Isolation of Bacterial Pathogens from Seed |
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343 | (1) |
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5.4.2 Stem-Printing Technique for Evaluation of Seed Transmission of Pantoea stewartii ssp. stewartii in Corn Seedlings |
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344 | (1) |
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5.4.3 Detection of Acidovorax avenae ssp. citrulli (Aac) by MAb-Captured-Sandwich ELISA (MC-sELISA) in Seed Extracts |
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344 | (1) |
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5.4.3.1 Detection of the Pathogen in Culture |
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344 | (1) |
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5.4.3.2 Detection of the Pathogen in Artificially and Naturally Infested Seeds |
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345 | (1) |
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5.4.4 Detection of Clavibacter michiganensis subsp. michiganensis (Cmm) in Tomato Seeds by Immunomagnetic Separation (IMS) Plating Technique |
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345 | (1) |
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5.4.4.1 Coating of Magnetic Beads |
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345 | (1) |
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5.4.4.2 Standardization of Immunoseparation Technique |
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345 | (1) |
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5.4.5 Detection of Xanthomonas campestris pv. carotae by PCR Assay |
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346 | (1) |
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5.4.5.1 Extraction of Pathogen DNA from Seeds |
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346 | (1) |
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5.4.5.2 Polymerase Chain Reaction (PCR) Assay |
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346 | (1) |
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5.4.6 Detection of Burkholderia glumae in Rice Seeds by Real-Time PCR Assay |
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346 | (1) |
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5.4.6.1 Preparation of Seed Wash |
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346 | (1) |
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5.4.6.2 Real-Time PCR Assay |
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347 | (1) |
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5.4.7 Detection and Quantification of Burkholderia spp. in Rice Seeds by Real-Time PCR Assay |
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347 | (1) |
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5.4.7.1 Isolation of DNA for Real-Time PCR Assay |
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347 | (1) |
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5.4.7.2 Real-Time PCR Assay |
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347 | (1) |
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5.4.7.3 Preparation of Standard Curve |
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348 | (1) |
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5.4.8 Detection of Pseudomonas syringae pv. phaseolicola in Bean Seed Washings by Membrane BIO-PCR Assay |
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348 | (1) |
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5.4.9 Detection of Acidovorax avenae subsp. citrulli in the Seeds of Watermelon by IMS-Real-Time PCR Assay |
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348 | (1) |
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5.4.9.1 Immunomagnetic Separation (IMS) |
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348 | (1) |
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5.4.9.2 Real-Time PCR Assay |
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349 | (1) |
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5.4.10 Detection of Acidovorax avenae subsp. citrulli (Aac) by Direct PCR and Immunocapture (IC-) PCR Assays in Watermelon Seeds |
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349 | (1) |
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5.4.10.1 Selection of Antibodies and Primers Specific to Aac |
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349 | (1) |
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5.4.10.2 Detection of Aac by Standard PCR Format |
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349 | (1) |
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5.4.10.3 Detection of Aac by IC-PCR Assay |
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349 | (1) |
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5.4.11 Detection of "Candidates Liberibacter solanacearum," Causative Agent of Potato Zebra Chip Disease by PCR Assay |
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350 | (1) |
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5.4.11.1 Extraction of DNA from Plant Tissues |
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350 | (1) |
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5.4.11.2 PCR Amplification |
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350 | (1) |
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5.4.12 Detection of Erwinia carotovora subsp. atroseptica (Eca) by Loop-Mediated Isothermal Amplification (LAMP) Assay in Potato |
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350 | (1) |
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5.4.12.1 Preparation of Genomic DNA of the Pathogen |
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350 | (1) |
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5.4.12.2 Preparation of Primers |
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351 | (1) |
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351 | (1) |
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5.4.13 Detection of Flavescence Doree Phytoplasma in Grapevine by Reverse-Transcription PCR Assay |
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351 | (24) |
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5.4.13.1 Extraction of Leaf Sap |
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351 | (1) |
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352 | (23) |
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6 Biology and Infection Process of Bacterial and Phytoplasmal Pathogens |
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375 | (82) |
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6.1 Biology of Bacterial Pathogens |
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375 | (2) |
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6.1.1 General Characteristics of Bacterial Pathogens |
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375 | (2) |
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6.2 Disease Cycles of Seedborne Bacterial Pathogens |
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377 | (32) |
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377 | (14) |
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391 | (4) |
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395 | (2) |
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397 | (4) |
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401 | (5) |
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6.2.6 Curtobacterium spp. |
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406 | (1) |
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407 | (1) |
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408 | (1) |
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6.3 Disease Cycles of Propagule-Borne Bacterial Pathogens |
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409 | (20) |
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410 | (4) |
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414 | (1) |
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414 | (3) |
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417 | (4) |
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6.3.5 Candidatus Liberibacter |
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421 | (5) |
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426 | (3) |
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6.4 Biology of Phytoplasmal Pathogens |
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429 | (2) |
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6.4.1 General Characteristics of Phytoplasmal Pathogens |
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430 | (1) |
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6.5 Disease Cycles of Phytoplasmal Pathogens |
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431 | (6) |
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6.5.1 Apple Proliferation Phytoplasma |
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434 | (1) |
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6.5.2 Lime Witches' Broom Phytoplasma |
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435 | (1) |
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6.5.3 Flavescence Doree (FD) Phytoplasma |
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436 | (1) |
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6.5.4 Palm Lethal Yellowing (LY) Phytoplasma |
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436 | (1) |
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437 | (1) |
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6.6.1 Stab-Inoculation of Xanthomonas campestris pv. vitians on Lettuce Plants |
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437 | (20) |
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6.6.1.1 Isolation of the Pathogen |
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437 | (1) |
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6.6.1.2 Determination of Pathogen Location in Lettuce Stems |
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437 | (1) |
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437 | (20) |
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7 Detection and Identification of Viruses and Viroids |
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457 | (162) |
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7.1 Detection of Viruses in Seeds |
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457 | (36) |
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7.1.1 Plant Virus Taxonomy |
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458 | (1) |
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458 | (5) |
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7.1.2.1 Symptoms Induced by Viruses |
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458 | (2) |
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7.1.2.2 Modes of Transmission of Viruses |
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460 | (3) |
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463 | (17) |
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7.1.3.1 Enzyme-Linked Immunosorbent Assay |
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464 | (12) |
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7.1.3.2 Dot-Immunobinding Assay |
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476 | (1) |
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7.1.3.3 Petridish-Agar Dot-Immunomagnetic Assay |
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477 | (1) |
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7.1.3.4 Fluorescent Antibody Technique |
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477 | (1) |
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7.1.3.5 Microscopy-Based Techniques |
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478 | (2) |
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7.1.4 Nucleic Acid-Based Techniques |
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480 | (13) |
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7.1.4.1 Nucleic Acid Hybridization |
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480 | (3) |
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7.1.4.2 Polymerase Chain Reaction Assays |
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483 | (8) |
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7.1.4.3 Combination of PCR Assay with Other Diagnostic Methods |
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491 | (2) |
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7.2 Detection of Viruses in Propagules |
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493 | (79) |
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7.2.1 Bioindexing Methods |
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494 | (1) |
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495 | (22) |
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7.2.2.1 Enzyme-Linked Immunosorbent Assays |
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499 | (10) |
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7.2.2.2 Tissue-Blot Immunoassay |
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509 | (3) |
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512 | (2) |
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7.2.2.4 Dot-Immunobinding Assay |
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514 | (1) |
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7.2.2.5 In Situ Immunoassay |
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515 | (1) |
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7.2.2.6 Immunosorbent Electron Microscopy |
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516 | (1) |
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7.2.3 Nucleic Acid-Based Techniques |
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517 | (39) |
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7.2.3.1 Nucleic Acid Hybridization |
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518 | (3) |
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7.2.3.2 Polymerase Chain Reaction Techniques |
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521 | (29) |
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7.2.3.3 Combination of RT-PCR with Other Diagnostic Assays |
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550 | (6) |
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7.2.4 Real-Time PCR Assay |
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556 | (6) |
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562 | (2) |
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7.2.6 Single-Strand Conformation Polymorphism Analysis |
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564 | (1) |
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7.2.7 Reverse-Transcription Loop-Mediated Isothermal Amplification |
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565 | (3) |
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7.2.8 DNA Array Technology |
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568 | (2) |
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7.2.9 Small-RNA Deep-Sequencing Analysis |
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570 | (2) |
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7.3 Detection of Viroids in Seeds |
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572 | (5) |
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7.3.1 Classification of Viroids |
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572 | (1) |
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573 | (1) |
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7.3.3 Physico-Chemical Methods |
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574 | (1) |
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7.3.4 Nucleic Acid-Based Techniques |
|
|
575 | (2) |
|
7.4 Detection of Viroids in Propagules |
|
|
577 | (13) |
|
7.4.1 Nucleic Acid-Based Techniques |
|
|
577 | (13) |
|
7.4.1.1 Nucleic Acid Hybridization |
|
|
578 | (3) |
|
7.4.1.2 Reverse-Transcription (RT-) PCR Techniques |
|
|
581 | (7) |
|
7.4.1.3 Reverse-Transcription Loop-Mediated Isothermal Amplification |
|
|
588 | (2) |
|
7.4.1.4 Single-Strand Conformation Polymorphism Analysis |
|
|
590 | (1) |
|
|
|
590 | (4) |
|
7.5.1 Detection of Citrus Tristeza Virus by Improved Direct Tissue-Blot Immunoassay (I-DTBIA) in Citrus Plants |
|
|
590 | (1) |
|
7.5.1.1 Preparation of Antibodies |
|
|
590 | (1) |
|
7.5.1.2 Improved DTBIA Procedure |
|
|
591 | (1) |
|
7.5.2 Detection of Tomato Spotted Wilt Virus (TSWV) in Ranunculus Tubers by Tissue-Blot Immunoassay |
|
|
591 | (1) |
|
7.5.2.1 Preparation of Plant Tissue Samples |
|
|
591 | (1) |
|
7.5.2.2 Tissue-Blot Immunoassay (TBIA) |
|
|
591 | (1) |
|
7.5.3 Detection of Citrus Tristeza Virus (CTV) by Hybridization Assays |
|
|
592 | (1) |
|
7.5.3.1 Preparation of Nucleic Acid Extracts |
|
|
592 | (1) |
|
|
|
592 | (1) |
|
7.5.4 Detection of Plum Pox Virus (PPV) by Real-Time RT-PCR and Its Variants |
|
|
592 | (1) |
|
7.5.4.1 Preparation of Crude Extracts of Plant Tissues |
|
|
592 | (1) |
|
7.5.4.2 Real-Time RT-PCR and Dilution, Spot, Tissue Print, and Squash Variants |
|
|
593 | (1) |
|
7.5.5 Detection of Potato Spindle Tuber Viroid by Reverse-Transcription Loop-Mediated Isothermal Amplification (LAMP) |
|
|
593 | (27) |
|
7.5.5.1 Extraction of Total Nucleic Acid from Potato Leaf, Tuber, and Tomato Leaf Tissues |
|
|
593 | (1) |
|
|
|
594 | (1) |
|
|
|
594 | (25) |
|
8 Biology and Infection Process of Viruses and Viroids |
|
|
619 | (50) |
|
8.1 Characteristics of Plant Viruses |
|
|
619 | (1) |
|
8.2 Biological Properties of Viruses |
|
|
620 | (12) |
|
8.2.1 Types of Symptoms Induced by Viruses |
|
|
620 | (3) |
|
8.2.2 Host Range of Viruses |
|
|
623 | (1) |
|
8.2.3 Genetic Variability of Viruses |
|
|
623 | (4) |
|
8.2.4 Modes of Transmission of Viruses |
|
|
627 | (1) |
|
8.2.5 Cross-Protection of Viruses |
|
|
628 | (4) |
|
8.3 Infection Process of Plant Viruses |
|
|
632 | (14) |
|
|
|
632 | (2) |
|
8.3.2 Movement of Plant Viruses |
|
|
634 | (6) |
|
8.3.2.1 Cell-to-Cell Movement |
|
|
634 | (3) |
|
8.3.2.2 Long-Distance Movement of Viruses |
|
|
637 | (3) |
|
8.3.3 Colonization of Plant Tissues by Viruses |
|
|
640 | (6) |
|
8.4 Characteristics of Viroids |
|
|
646 | (5) |
|
8.4.1 Biological Properties of Viroids |
|
|
647 | |
|
8.4.1.1 Types of Symptoms |
|
|
647 | (1) |
|
8.4.1.2 Diagnostic Hosts and Host Range |
|
|
647 | (2) |
|
8.4.1.3 Modes of Viroid Transmission |
|
|
649 | (2) |
|
8.5 Infection Process of Viroids |
|
|
651 | (5) |
|
|
|
656 | (13) |
|
|
|
669 | |
| Volume 2 Epidemiology and Management of Crop Diseases |
|
|
|
|
xi | |
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|
xiii | |
|
9 Epidemiology of Seed- and Propagule-Borne Diseases |
|
|
3 | (49) |
|
9.1 Epidemiology of Fungal Diseases |
|
|
4 | (23) |
|
9.1.1 Dynamics of Host-Fungal-Pathogen Interactions |
|
|
4 | (20) |
|
|
|
5 | (8) |
|
|
|
13 | (3) |
|
9.1.1.3 Environmental Factors |
|
|
16 | (8) |
|
9.1.2 Molecular Ecology and Epidemiology of Fungal Diseases |
|
|
24 | (3) |
|
9.2 Epidemiology of Bacterial Diseases |
|
|
27 | (10) |
|
9.2.1 Dynamics of Host-Bacterial-Pathogen Interactions |
|
|
27 | (8) |
|
|
|
27 | (5) |
|
|
|
32 | (2) |
|
9.2.1.3 Environmental Factors |
|
|
34 | (1) |
|
9.2.2 Molecular Ecology and Epidemiology of Bacterial Diseases |
|
|
35 | (2) |
|
9.3 Epidemioloy of Virus Diseases |
|
|
37 | (5) |
|
9.3.1 Dynamics of Host-Virus Interactions |
|
|
37 | (1) |
|
9.3.2 Quantitative Epidemiology |
|
|
38 | (1) |
|
9.3.3 Molecular Ecology and Epidemiology of Virus Diseases |
|
|
39 | (13) |
|
9.3.3.1 Molecular Biology of Virus Infection |
|
|
40 | (1) |
|
9.3.3.2 Molecular Biology of Virus Transmission |
|
|
41 | (1) |
|
|
|
42 | (10) |
|
10 Crop Disease Management: Exclusion of Pathogens |
|
|
52 | (48) |
|
10.1 Health Status of Seeds and Propagules |
|
|
52 | (11) |
|
10.1.1 Certification of Seeds and Propagules |
|
|
53 | (10) |
|
10.1.1.1 Application of Diagnostic Techniques |
|
|
53 | (10) |
|
10.2 Plant Quarantines for Preventing Entry of Microbial Pathogens |
|
|
63 | (9) |
|
10.2.1 Principles of Plant Quarantines |
|
|
63 | (1) |
|
10.2.2 Functions of Regional Plant Quarantine Organizations |
|
|
64 | (1) |
|
10.2.3 Impact of Introduced Pathogens |
|
|
65 | (3) |
|
10.2.3.1 Potato Late Blight Disease |
|
|
65 | (1) |
|
10.2.3.2 Citrus Canker Disease |
|
|
65 | (1) |
|
10.2.3.3 Panama (Fusarium) Wilt Disease of Banana |
|
|
66 | (1) |
|
10.2.3.4 Banana Bunchy Top Disease |
|
|
66 | (1) |
|
10.2.3.5 Strawberry Anthracnose Disease |
|
|
67 | (1) |
|
10.2.3.6 Potato Virus Diseases |
|
|
67 | (1) |
|
10.2.4 Assessment of Efficiency of Quarantines |
|
|
68 | (4) |
|
10.3 Production of Disease-Free Seeds and Propagules |
|
|
72 | (17) |
|
10.3.1 Production of Virus-Free Plants |
|
|
72 | (11) |
|
10.3.1.1 Meristem-Tip Culture |
|
|
72 | (8) |
|
|
|
80 | (1) |
|
|
|
81 | (1) |
|
|
|
81 | (2) |
|
10.3.2 Production of Viroid-Free Plants |
|
|
83 | (1) |
|
10.3.3 Production of Bacterial and Phytoplasmal Pathogen-Free Plants |
|
|
84 | (5) |
|
|
|
89 | (2) |
|
10.4.1 Elimination of Sweet Potato Little Leaf Phytoplasma from Sweet Potato by Cryotherapy of Shoot Tips |
|
|
89 | (11) |
|
10.4.1.1 Preparation of Plant Materials |
|
|
89 | (2) |
|
10.4.1.2 Cryotherapy of In-Vitro-Grown Shoot Tips |
|
|
91 | (1) |
|
|
|
91 | (9) |
|
11 Crop Disease Management: Reduction of Pathogen Inoculum |
|
|
100 | (42) |
|
11.1 Reduction of Pathogen Inoculum by Cultural Practices |
|
|
100 | (23) |
|
11.1.1 Elimination of Infected Plants and Debris |
|
|
100 | (2) |
|
11.1.2 Effects of Tillage Practices |
|
|
102 | (2) |
|
11.1.3 Effects of Sowing Time and Planting Density |
|
|
104 | (2) |
|
11.1.4 Effects of Irrigation Practices |
|
|
106 | (2) |
|
11.1.5 Effects of Crop Nutrition |
|
|
108 | (7) |
|
11.1.5.1 Use of Organic Matter |
|
|
110 | (1) |
|
11.1.5.2 Use of Inorganic Fertilizers |
|
|
111 | (4) |
|
11.1.6 Effects of Other Crops |
|
|
115 | (8) |
|
|
|
115 | (6) |
|
|
|
121 | (1) |
|
11.1.6.3 Multiple Cropping |
|
|
121 | (2) |
|
11.2 Reduction of Pathogen Inoculum by Physical Techniques |
|
|
123 | (9) |
|
11.2.1 Treatment of Seeds and Propagules |
|
|
123 | (9) |
|
|
|
124 | (4) |
|
11.2.1.2 Forced-Air Treatment |
|
|
128 | (1) |
|
11.2.1.3 Radiation and Microwave Treatments |
|
|
128 | (1) |
|
11.2.1.4 Use of Inorganic Mulches |
|
|
129 | (3) |
|
11.3 Reduction of Pathogen Inoculum by Chemical Techniques |
|
|
132 | (1) |
|
11.3.1 Treatment of Seeds |
|
|
132 | (1) |
|
11.3.1.1 Chemical Application |
|
|
132 | (1) |
|
|
|
133 | (1) |
|
11.3.2 Treatment of Soils |
|
|
133 | (1) |
|
|
|
133 | (9) |
|
12 Crop Disease Management: Enhancement of Genetic Resistance of Crop Plants |
|
|
142 | (82) |
|
12.1 Types of Disease Resistance |
|
|
142 | (3) |
|
12.1.1 Vertical and Horizontal Resistances |
|
|
143 | (1) |
|
12.1.2 Durable Resistance |
|
|
144 | (1) |
|
12.2 Identfication of Sources of Resistance to Crop Diseases |
|
|
145 | (43) |
|
12.2.1 Screening for Disease Resistance |
|
|
145 | (43) |
|
12.2.1.1 Assessment of Resistance by Visual Examination |
|
|
145 | (22) |
|
12.2.1.2 Assessment of Resistance by Quantification of Pathogen Biomass |
|
|
167 | (3) |
|
12.2.1.3 Molecular Basis of Resistance to Fungal Diseases |
|
|
170 | (9) |
|
12.2.1.4 Molecular Basis of Resistance to Bacterial Diseases |
|
|
179 | (5) |
|
12.2.1.5 Molecular Basis of Resistance to Virus Diseases |
|
|
184 | (4) |
|
12.3 Improvement of Disease Resistance Through Biotechnological Approaches |
|
|
188 | (17) |
|
12.3.1 Tissue and Cell Culture Techniques |
|
|
189 | (3) |
|
12.3.1.1 Somaclonal Variation |
|
|
189 | (1) |
|
12.3.1.2 In Vitro Selection for Disease Resistance |
|
|
190 | (2) |
|
12.3.1.3 Induction of Mutation Using Chemicals |
|
|
192 | (1) |
|
12.3.2 Transgenic Resistance to Crop Diseases |
|
|
192 | (33) |
|
12.3.2.1 Transgenic Resistance to Virus Diseases |
|
|
193 | (4) |
|
12.3.2.2 Transgenic Resistance to Fungal Diseases |
|
|
197 | (6) |
|
12.3.2.3 Transgenic Resistance to Bacterial Diseases |
|
|
203 | (2) |
|
|
|
205 | (19) |
|
13 Crop Disease Management: Biological Management Strategies |
|
|
224 | (82) |
|
13.1 Evaluation of Biotic Agents for Biological Control Potential |
|
|
225 | (37) |
|
13.1.1 Fungal Biological Control Agents |
|
|
225 | (2) |
|
13.1.2 Bacterial Biological Control Agents |
|
|
227 | (7) |
|
13.1.3 Viral Biological Control Agents |
|
|
234 | (10) |
|
13.1.3.1 Mild Strains as Biological Control Agents |
|
|
237 | (7) |
|
13.1.4 Mechanisms of Action of Biological Control Activities of Biotic Agents |
|
|
244 | (16) |
|
13.1.4.1 Mechanisms of Action of Fungal Biological Control Agents |
|
|
244 | (5) |
|
13.1.4.2 Mechanisms of Action of Bacterial Biological Control Agents |
|
|
249 | (9) |
|
13.1.4.3 Mechanisms of Action of Mild Strains of Viruses |
|
|
258 | (2) |
|
13.1.5 Improvement of Biological Control Potential of Biotic Agents |
|
|
260 | (1) |
|
13.1.6 Transformation Crop Plants with Genes of Biological Control Agents |
|
|
261 | (1) |
|
13.2 Evaluation of Abiotic Agents for Biological Control Potential |
|
|
262 | (21) |
|
13.2.1 Effects of Addition of Organic Matter |
|
|
262 | (3) |
|
13.2.2 Effects of Products from Plant Sources |
|
|
265 | (4) |
|
13.2.3 Effects of Products from Animal Sources |
|
|
269 | (2) |
|
13.2.4 Effects of Organic Compounds |
|
|
271 | (9) |
|
13.2.5 Effects of Inorganic Compounds |
|
|
280 | (3) |
|
13.3 Methods of Application of Formulated Products of Biological Control Agents |
|
|
283 | (6) |
|
13.3.1 Treatment of Seeds |
|
|
283 | (3) |
|
13.3.2 Treatment of Propagules/Transplants |
|
|
286 | (2) |
|
13.3.3 Treatment of Soils |
|
|
288 | (1) |
|
13.3.4 Treatment of Foliage of Plants |
|
|
289 | (1) |
|
13.4 Integration of Biological Control with Other Management Practices |
|
|
289 | (1) |
|
13.4.1 Integration with Fertilizer Application |
|
|
289 | (1) |
|
13.4.2 Integration with Fungicide Application |
|
|
290 | (1) |
|
|
|
290 | (16) |
|
14 Crop Disease Management: Chemical Application |
|
|
306 | (55) |
|
14.1 Application of Fungicides |
|
|
307 | (34) |
|
14.1.1 Seed/Propagule Treatment |
|
|
307 | (9) |
|
|
|
316 | (1) |
|
14.1.3 Treatment of Aerial Plant Parts |
|
|
317 | (7) |
|
14.1.4 Development of Resistance in Fungal Pathogens to Fungicides |
|
|
324 | (17) |
|
14.2 Application of Chemicals Against Bacterial Diseases |
|
|
341 | (7) |
|
14.3 Application of Chemicals Against Virus Diseases |
|
|
348 | (3) |
|
14.3.1 Application of Antiviral Chemicals |
|
|
348 | (1) |
|
14.3.2 Chemicals Applied Against Vectors of Viruses |
|
|
349 | (2) |
|
|
|
351 | (10) |
|
15 Crop Disease Management: Integration of Strategies |
|
|
361 | (22) |
|
15.1 Development of Integrated Disease Management Systems |
|
|
361 | (3) |
|
15.1.1 Selection of Strategies for Integration |
|
|
362 | (2) |
|
15.2 Management of Fungal Diseases |
|
|
364 | (5) |
|
15.2.1 Fusarium Head Blight Disease |
|
|
364 | (1) |
|
15.2.2 Rice Blast Disease |
|
|
365 | (1) |
|
15.2.3 Rice Sheath Blight Disease |
|
|
366 | (1) |
|
15.2.4 Late Blight Diseases of Tomato and Potato |
|
|
367 | (2) |
|
15.3 Management of Bacterial Diseases |
|
|
369 | (4) |
|
15.3.1 Rice Bacterial Leaf Blight Disease |
|
|
369 | (2) |
|
15.3.2 Tomato Bacterial Canker Disease |
|
|
371 | (1) |
|
15.3.3 Potato Scab Diseases |
|
|
371 | (1) |
|
15.3.4 Citrus Canker Disease |
|
|
372 | (1) |
|
15.4 Management of Virus Diseases |
|
|
373 | (4) |
|
15.4.1 Management of Seedborne Virus Diseases |
|
|
374 | (1) |
|
15.4.2 Management of Propagule-Borne Virus Diseases |
|
|
375 | (2) |
|
|
|
377 | (6) |
|
|
|
383 | |