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E-raamat: Genome Informatics: Proceedings of the 18th International Conference 2007 illustrated edition, v. 19 [World Scientific e-raamat]

Edited by (Kyoto Univ, Japan), Edited by (A*star, S'pore), Edited by (Nus, S'pore)
  • Formaat: 216 pages
  • Sari: Genome Informatics Series
  • Ilmumisaeg: 06-Nov-2007
  • Kirjastus: Imperial College Press
  • ISBN-13: 9781860949852
Teised raamatud teemal:
  • World Scientific e-raamat
  • Raamatu hind pole hetkel teada
  • Formaat: 216 pages
  • Sari: Genome Informatics Series
  • Ilmumisaeg: 06-Nov-2007
  • Kirjastus: Imperial College Press
  • ISBN-13: 9781860949852
Teised raamatud teemal:
This volume contains papers presented at the 18th International Conference on Genome Informatics (GIW 2007) held at the Biopolis, Singapore from December 3 to 5, 2007. The GIW Series provides an international forum for the presentation and discussion of original research papers on all aspects of bioinformatics, computational biology and systems biology. Its scope includes biological sequence analysis, protein folding prediction, gene regulatory network, clustering algorithms, comparative genomics, and text mining. Boasting a history of 18 years, GIW is likely the longest-running international bioinformatics conference.A total of 16 papers were selected for presentation at GIW 2007 and inclusion in this book. The notable authors include Ming Li (University of Waterloo, Canada), Minoru Kanehisa (Kyoto University, Japan), Vladimir Kuznetsov (Genome Institute of Singapore), Tao Jiang (UC Riverside, USA), Christos Ouzounis (European Bioinformatics Institute, UK), and Satoru Miyano (University of Tokyo, Japan). In addition, this book contains abstracts from the five invited speakers: Frank Eisenhaber (Bioinformatics Institute, Singapore), Sir David Lane (Institute of Molecular and Cell Biology, Singapore), Hanah Margalit (The Hebrew University of Jerusalem, Israel), Lawrence Stanton (Genome Institute of Singapore), and Michael Zhang (Cold Spring Harbor Laboratory, USA).
Preface ix
Acknowledgments xi
Committees xiii
Part A Full Papers 1
Detection of Monosaccharide Types from Coordinates
3
M. Arita T. Tokimatsu
Mining Super-Secondary Structure Motifs from 3D Protein Structures: A Sequence Order Independent Approach
15
Z. Aung J. Li
FragQA: Predicting Local Fragment Quality of a Sequence-Structure Alignment
27
X. Gao, D. Bu, S.C. Li, J. Xu M. Li
Predicting B Cell Epitope Residues with Network Topology Based Amino Acid Indices
40
J. Huang, W. Honda M. Kanehisa
Comparative Pair-Wise Domain-Combinations for Screening the Clade Specific Domain-Architectures in Metazoan Genomes
50
S. Kawashima, T. Kawashima, N.H. Putnam, D.S. Rokhsar, H. Wada & M. Kanehisa
Conservative Parametric Approach to Motif Significance Analysis
61
U. Keich & P. Ng
Recognition of Polyadenylation Sites from Arabidopsis Genomic Sequences
C.H. Koh & L. Wong
Computational Analysis and Modeling of Genome-Scale Avidity Distribution of Transcription Factor Binding Sites in ChIP-PET Experiments
83
V. Kuznetsov, Y.L. Orlov, C.L. Wei & Y. Ruan
Linear-Time Reconstruction of Zero-Recombinant Mendelian Inheritance on Pedigrees without Mating Loops
95
L. Liu & T. Jiang
Computed Protonation Properties: Unique Capabilities for Protein Functional Site Prediction
107
L.F. Murga, Y. Wei & M.J. Ondrechen
An Accurate and Efficient Algorithm for Peptide and PTM Identification by Tandem Mass Spectrometry
119
K. Ning, H.K. Ng & H.W. Leong
The Comparative Genomics of Protein Interactions
131
J.M. Peregrin-Alvarez & C. Ouzounis
Weighted Lasso in Graphical Gaussian Modeling for Large Gene Network Estimation Based on Microarray Data
142
T. Shimamura, S. Imoto, R. Yamaguchi hi S. Miyano
GO Based Tissue Specific Functions of Mouse using Countable Gene Expression Profiles
154
Y. Takenaka, A. Matsumoto hi H. Matsuda
Functional Centrality: Detecting Lethality of Proteins in Protein Interaction Networks
166
K. L. Tew, X.-L. Li, hi S.-H. Tan
The in silico Prediction of Promoters in Bacterial Genomes
178
M. Towsey, J.M. Hogan, S. Mathews & P. Timms
Part B Keynote Addresses 191
Discovering Biomolecular Mechanisms with Protein Sequence Studies: The Annotator Software Suite
193
F. Eisenhaber
The p53 Pathway
194
D. Lane
Regulation of Gene Expression by Small Non-Coding RNAs
195
H. Margalit
Mapping the Transcriptional Network in Stem Cells Regulated by REST
196
L.W. Stanton
Computational Dissection of Mammalian Regulation Networks
197
M. Zhang
Author Index 199