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E-raamat: Genome Informatics: Proceedings of the 19th International Conference 2008 [World Scientific e-raamat]

Edited by (A*star, S'pore), Edited by (Univ Of Sydney, Australia)
  • Formaat: 252 pages
  • Sari: Genome Informatics Series
  • Ilmumisaeg: 07-Nov-2008
  • Kirjastus: Imperial College Press
  • ISBN-13: 9781848163324
Teised raamatud teemal:
  • World Scientific e-raamat
  • Raamatu hind pole hetkel teada
  • Formaat: 252 pages
  • Sari: Genome Informatics Series
  • Ilmumisaeg: 07-Nov-2008
  • Kirjastus: Imperial College Press
  • ISBN-13: 9781848163324
Teised raamatud teemal:
This volume contains papers presented at the 19th International Conference on Genome Informatics (GIW 2008) held at the Marriott Surfers Paradise Resort, Gold Coast, Queensland, Australia from December 1 to 3, 2008. The GIW Series provides an international forum for the presentation and discussion of original research papers on all aspects of bioinformatics, computational biology and systems biology. Its scope includes biological sequence analysis, protein structure prediction, genetic regulatory networks, bioinformatic algorithms, comparative genomics, and biomolecular data integration and analysis. Boasting a history of 19 years, GIW is the longest-running international bioinformatics conference.A total of 18 contributed papers were selected for presentation at GIW 2008 and for inclusion in this book. The selected papers come from institutions in 18 countries. In addition, this book contains abstracts from the six invited speakers: Sean Grimmond (Institute for Molecular Bioscience, The University of Queensland, Australia), Eugene V Koonin (National Center for Biotechnology Information, National Institutes of Health, USA), Ming Li (University of Waterloo, Canada), Yi-Xue Li (Chinese Academy of Sciences and Shanghai Jiaotong University, China), John Mattick (Institute for Molecular Bioscience, The University of Queensland, Australia), and Eric Schadt (Rosetta Inpharmatics, USA).
Preface ix
Acknowledgments xi
Committees xiii
Part A Full Papers
1(224)
An Approach to Transcriptome Analysis of Non-Model Organisms Using Short-Read Sequences
3(12)
L. J. Collins
P. J. Biggs
C. Voelckel
S. Joly
Factoring Local Sequence Composition in Motif Significance Analysis
15(12)
P. Ng
U. Keich
A New Model of Multi-Marker Correlation for Genome-Wide Tag SNP Selection
27(15)
W.-B. Wang
T. Jiang
Phenotype Profiling of Single Gene Deletion Mutants of E. coli Using Biolog Technology
42(11)
Y. Tohsato
H. Mori
Improved Algorithms for Enumerating Tree-Like Chemical Graphs with Given Path Frequency
53(12)
Y. Ishida
L. Zhao
H. Nagamochi
T. Akutsu
BSAlign: A Rapid Graph-Based Algorithm for Detecting Ligand-Binding Sites in Protein Structures
65(12)
Z. Aung
J. C. Tong
Protein Complex Prediction Based on Mutually Exclusive Interactions in Protein Interaction Network
77(12)
S. H. Jung
W.-H. Jang
H.-Y. Hur
B. Hyun
D.-S. Han
On the Reconstruction of the Mus musculus Genome-Scale Metabolic Network Model
89(12)
L.-E. Quek
L. Nielsen
Predicting Differences in Gene Regulatory Systems by State Space Models
101(13)
R. Yamaguchi
S. Imoto
M. Yamauchi
M. Nagasaki
R. Yoshida
T. Shimamura
Y. Hatanaka
K. Ueno
T. Higuchi
N. Gotoh
S. Miyano
Exploratory Simulation of Cell Ageing Using Hierarchical Models
114(12)
M. Cvijovic
H. Soueidan
D. J. Sherman
E. Klipp
M. Nikolski
Inferring Differential Leukocyte Activity from Antibody Microarrays Using a Latent Variable Model
126(12)
J. W. K. Ho
R. Koundinya
T. S. Caetano
C. G. dos Remedios
M. A. Charleston
Assessing and Predicting Protein Interactions Using Both Local and Global Network Topological Metrics
138(12)
G. Liu
J. Li
L. Wong
Modelling the Evolution of Protein Coding Sequences Sampled from Measurably Evolving Populations
150(15)
M. Goode
S. Guindon
A. Rodrigo
A Phylogenomic Approach for Studying Plastid Endosymbiosis
165(12)
A. Moustafa
C. X. Chan
M. Danforth
D. Zear
H. Ahmed
N. Jadhav
T. Savage
D. Bhattacharya
Cis-Regulatory Element Based Gene Finding: An Application in Arabidopsis thaliana
177(11)
Y. Li
Y. Zhu
Y. Liu
Y. Shu
F. Meng
Y. Lu
B. Liu
X. Bai
D. Guo
Using Simple Rules on Presence and Positioning of Motifs for Promoter Structure Modeling and Tissue-Specific Expression Prediction
188(12)
A. Vandenbon
K. Nakai
Improving Gene Expression Cancer Molecular Pattern Discovery Using Nonnegative Principal Component Analysis
200(12)
X. Han
Simulation Analysis for the Effect of Light-Dark Cycle on the Entrainment in Circadian Rhythm
212(13)
N. Mitou
Y. Ikegami
H. Matsuno
S. Miyano
S.-I. T. Inouye
Part B Keynote Addresses
225(10)
Sequencing the Transcriptome in toto
227(2)
S. M. Grimmond
Modern Homology Search
229(1)
M. Li
Modeling Human Genome-Wide Combinatorial Regulatory Networks Initiated by Transcription Factors and microRNAs Using Forward and Reverse Engineering
230(1)
Y.-X. Li
Reconstructing the Circuits of Disease: From Molecular States to Physiological States
231(1)
E. E. Schadt
The Emerging Generalizations of Prokaryotic Genomics
232(1)
E. V. Koonin
A New Understanding of the Human Genome
233(2)
J. Mattick
Author Index 235