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Applying the FAIR Principles to Accelerate Health Research in Europe in the post COVID-19 Era: Proceedings of the 2021 EFMI Special Topic Conference [Pehme köide]

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Medical Informatics has increasingly come into focus in the last couple of years, as the importance of managing and interpreting health data in dealing with a global pandemic has become dramatically apparent. This book presents the proceedings of the 2021 European Federation for Medical Informatics (EFMI) Special Topic Conference (STC), originally planned as a live event in Seville, Spain, but ultimately held as a virtual event from 22 24 November 2021. This conference focused on applying the FAIR principles (Findability, Accessibility, Interoperability and Reusability) to accelerate health research in Europe in the post COVID-19 era. The 38 papers included here are divided into 5 sections, and topics covered include: methods for the adoption of FAIR principles; FAIR-based precision medicine; AI in FAIR data-driven health; privacy and security aspects of applying FAIR in health research; FAIR and infectious-disease research data (including Covid-19); FAIR in infrastructures and software; metadata, ontologies and terminologies to support the sharing of health research data; and paradigms for sharing health research data. Offering a state-of-the-art overview of medical informatics in the post-Covid era, the book will be of interest to all those working in the field.
Preface v
Jaime Delgado
EFMI Special Topic Conference 2021 - Scientific Programme Committee and Reviewers vii
Section I Artificial Intelligence in Health FAIR Data Driven & FAIR on Infrastructures and Software
Federated Mining of Interesting Association Rules Over EHRs
3(5)
Carlos Molina
Belen Prados-Suarez
Beatriz Martinez-Sanchez
Encoding Health Records into Pathway Representations for Deep Learning
8(5)
Marco Luca Sbodio
Natasha Mulligan
Stefanie Speichert
Vanessa Lopez
Joao Bettencourt-Silva
A Learning Framework for Medical Image-Based Intelligent Diagnosis from I mbalanced Datasets
13(5)
Tetiana Biloborodova
Inna Skarga-Bandurova
Mark Koverha
Illia Skarha-Bandurov
Yelyzaveta Yevsieieva
Assessing Acceptance Level of a Hybrid Clinical Decision Support Systems
18(5)
Georgy Kopanitsa
Ilia V. Derevitskii
Daria A. Savitskaya
Sergey V. Kovalchuk
A Data-Driven Intervention Framework for Improving Adherence to Growth Hormone Therapy Based on Clustering Analysis and Traffic Light Alerting Systems
23(5)
Matheus Araujo
Paula van Dommelen
Jaideep Srivastava
Ekaterina Koledova
Development of a FHIR Layer on Top of the OMOP Common Data Model for the CAPABLE Project
28(2)
Matteo Gabetta
Anna Alloni
Francesco Polce
Giordano Lanzola
Enea Parimbelli
Nicola Barbarini
Automatic Data Transfer from OMOP-CDM to REDCap: A Semantically-Enriched Framework
30(5)
Emanuele Girani
Matteo Gabetta
Anna Alloni
Morena Stuppia
Lucia Sacchi
Nicola Barbarini
Section II Methods for the Adoption of FAIR Principles & Privacy and Security Aspects Applying FAIR in Health Research
FAIRification Efforts of Clinical Researchers: The Current State of Affairs
35(5)
Martijn G. Kersloot
Philip van Damme
Ameen Abu-Hanna
Derk L. Arts
Ronald Cornet
Best Research Practice Implementation: The Experience of the N.N. Burdenko National Medical Research Center of Neurosurgery
40(5)
Gleb Danilov
Michael Shifrin
Yulia Strunina
Timur Ishankulov
Timur Zagidullin
Elizaveta Makashova
Igor Pronin
Nikolay Konovalov
Alexander Potapov
Pilot Study of an e-Cohort to Monitor Adverse Event for Patient with Hip Prostheses from Clinical Data Warehouse
45(5)
Thibault Dhalluin
Marie Ansoborlo
Philippe Rosset
Heme Thomazeau
Marc Cuggia
Leslie Guillon
FAIR Aspects of a Genomic Information Protection and Management System
50(5)
Jaime Delgado
Silvia Llorente
Extraction of Temporal Structures for Clinical Events in Unlabeled Free-Text Electronic Health Records in Russian
55(2)
Anastasia A. Funkner
Dmitrii A. Zhurman
Sergey V. Kovalchuk
One Digital Health Is FAIR
57(2)
Arriel Benis
Oscar Tamburis
Investigating the FAIR Equivalency in National Guidance in Health in Kenya
59(4)
Esther Thea Inau
Reginald Nalugala
William Muhadi Nandwa
Fredrick Obwanda
Antony Wachira
Dagmar Waltemath
Antonio Cartaxo
Atinkut Zeleke
Section III FAIR and COVID-19 (and Other Infective Diseases) Research Data
Transfer of Clinical Drug Data to a Research Infrastructure on OMOP - A FAIR Concept
63(5)
Ines Reinecke
Michele Zoch
Markus Wilhelm
Martin Sedlmayr
Franziska Bathelt
Beyond the FAIRness of COVID-19 Data: What about Quality?
68(5)
Fabrizio Pecoraro
Daniela Luzi
Fast Healthcare Interoperability Resources (FHIR) in a FAIR Metadata Registry for COVID-19 Research
73(5)
Sophie Anne Ines Klofenstein
Carina Nina Vorisek
Aliaksandra Shutsko
Moritz Lehne
Julian Sass
Matthias Lobe
Carsten Oliver Schmidt
Sylvia Thun
Improving the FAIRness of Health Studies in Germany: The German Central Health Study Hub COVID-19
78(5)
Johannes Darms
Jorg Henke
Xioaming Hu
Carsten Oliver Schmidt
Martin Golebiewski
Juliane
Fluck and NFDUHealth Task Force COVID-19 From EHR to EDC - The Experience at the Policlinico Hospital in Milan
83(2)
Sara Pizzimenti
Mauro Bucalo
Amedeo Guzzardella
Eleonora Ferretti
Angelo Caroli
Alberto Zanella
Giacomo Grasselli
Nicola Barbarini
Silvano Bosari
Towards FAIR Patient Reported Outcome: Application of the Interoperability Principle for Mobile Pandemic Apps
85(4)
Michael Rusongoza Muzoora
Marco Schaarschmidt
Dagmar Krefting
Johannes Oehm
Sarah Riepenhausen
Sylvia Thun
Section IV Metadata, Ontologies and Terminologies to Support Sharing of Health Research Data
Automated Modeling of Clinical Narrative with High Definition Natural Language Processing Using Solor and Analysis Normal Form
89(5)
Melissa P. Resnick
Frank LeHouillier
Steven H. Brown
Keith E. Campbell
Diane Montella
Peter L. Elkin
Distribution-Based Similarity Measures Applied to Laboratory Results Matching
94(5)
Martin Courtois
Alexandre Filiot
Gregoire Ficheur
A Methodology for an Auto-Generated and Auto-Maintained HL7 FHIR OWL Ontology for Health Data Management
99(5)
Vassilis Kilintzis
Vasileios C. Alexandropoulos
Nikolaos Beredimas
Nicos Maglaveras
Assessing Resolvability and Consistency in OBO Foundry Ontologies: Pilot Study
104(5)
Shuxin Zhang
Nirupama Benis
Ronald Cornet
Intelligent Integrative Platform for Sharing Heterogenuous Stem Cell Research Data
109(5)
Kirill Borziak
Irena Parvanova
Joseph Finkelstein
Interoperability Standards for Data Sharing as a Basis to Fill in a Tailored EHR for Undiagnosed Rare Diseases
114(5)
Norbert Maggi
Ariam Boaglio
Car me Una Ruggiero
Roberto Fancellu
Francesco Cocchiara
Domenico Coviello
Deborah Capanna
Mauro Giacomini
Semantics Management for a Regional Health Information System in Italy by CTS2 and FHIR
119(5)
Roberta Gazzarata
Norbert Maggi
Luca Douglas Magnoni
Maria Eugenia Monteverde
Carmelina Ruggiero
Mauro Giacomini
What Metadata? Defining Different Types of Digital Assets as Application Targets of Metadata in Clinical Research Informatics
124(5)
Matthias Lobe
Section V Paradigms to Share Health Research Data & Various Health Informatics Studies
Making EHRs Reusable: A Common Framework of Data Operations
129(5)
Miguel Pedrera
Noelia Garcia
Paula Rubio
Juan Luis Cruz
Jose Luis Bernal
Pablo Serrano
Utilising the FOXS Stack for FAIR Architected Data Access
134(5)
John Meredith
Nik Whitehead
Michael Dacey
Challenges and Experiences Extending the cBioPortal for Cancer Genomics to a Molecular Tumor Board Platform
139(5)
Niklas Reimer
Philipp Unberath
Hauke Busch
Melanie Borries
Patrick Metzger
Arsenij Ustjanzew
Christopher Renner
Hans-Ulrich Prokosch
Jan Christoph
Deep Learning, a Not so Magical Problem Solver: A Case Study with Predicting the Complexity of Breast Cancer Cases
144(5)
My-Anh Le Thien
Akram Redjdal
Jacques Bouaud
Brigitte Seroussi
Influence of Healthcare Organization Factors on Cardiovascular Diseases Mortality
149(4)
Oleg Metsker
Georgy Kopanitsa
Are Semantic Annotators Able to Extract Relevant Complexity-Related Concepts from Clinical Notes?
153(5)
Akram Redjdal
Jacques Bouaud
Joseph Gligorov
Brigitte Seroussi
Chios Hospital Information System Assessment
158(5)
Konstantinos Karitis
Parisis Gallos
Ioannis S. Triantafyllou
Vassilis Plagianakos
Changes in Users Trends Before and During the COVID-19 Pandemic on WHO's Online Learning Platform
163(2)
Heini Utunen
Ngouille Ndiaye
Lama Mattar
Paula Christen
Oliver Stucke
Gaya Gamhewage
Network Analysis of COVID-19 Vaccine Misinformation on Social Media
165(2)
Chad Melton
Olufunto A. Olusanya
Arash Shaban-Nejad
An Online Information Tool for Diabetic Retinopathy
167(2)
George Agriodimos
Parisis Gallos
Sotiris Tasoulis
Loannis Anagnostopoulos
Subject Index 169(2)
Author Index 171