Preface |
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vii | |
Computational Approaches To Understanding The Evolution Of Molecular Function |
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1 | (2) |
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Identification and Analysis of Bacterial Genomic Metabolic Signatures |
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3 | (12) |
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When should we NOT transfer functional annotation between sequence paralogs? |
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15 | (12) |
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ProSNet: integrating homology with molecular networks for protein function prediction |
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27 | (12) |
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On the power and limits of sequence similarity based clustering of proteins into families |
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39 | (12) |
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Imaging Genomics |
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51 | (7) |
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Adaptive testing of SNP-brain functional connectivity association via a modular network analysis |
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58 | (12) |
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Exploring Brain Transcriptomic Patterns: A Topological Analysis Using Spatial Expression Networks |
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70 | (12) |
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Integrative Analysis for Lung Adenocarcinoma Predicts Morphological Features Associated with Genetic Variations |
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82 | (12) |
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Identification of Discriminative Imaging Proteomics Associations in Alzheimer's Disease via a Novel Sparse Correlation Model |
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94 | (11) |
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Enforcing Co-expression in Multimodal Regression Framework |
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105 | (12) |
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Methods To Ensure The Reproducibility Of Biomedical Research |
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117 | (3) |
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Exploring the Reproducibility of Probabilistic Causal Molecular Network Models |
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120 | (12) |
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Reproducible Drug Repurposing: When Similarity Does Not Suffice |
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132 | (12) |
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Empowering Multi-Cohort Gene Expression Analysis to Increase Reproducibility |
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144 | (10) |
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Rabix: An Open-Source Workflow Executor Supporting Recomputability and Interoperability of Workflow Descriptions |
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154 | (12) |
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Data Sharing and Reproducible Clinical Genetic Testing: Successes and Challenges |
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166 | (11) |
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Patterns In Biomedical Data-How Do We Find Them? |
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177 | (7) |
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Learning Attributes of Disease Progression from Trajectories of Sparse Lab Values |
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184 | (11) |
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Computer Aided Image Segmentation and Classification for Viable and Non-Viable Tumor Identification in Osteosarcoma |
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195 | (12) |
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Missing Data Imputation in the Electronic Health Record Using Deeply Learned Autoencoders |
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207 | (12) |
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he Pooled Resource Open-Access ALS Clinical Trials Consortium, A Deep Learning Approach for Cancer Detection and Relevant Gene Identification |
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219 | (11) |
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Development and Performance of Text-Mining Algorithms to Extract Socioeconomic Status from De-Identified Electronic Health Records |
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230 | (12) |
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Genome-Wide Interaction with Selected Type 2 Diabetes Loci Reveals Novel Loci for Type 2 Diabetes in African Americans |
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242 | (12) |
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Laura J. Rasmussen-Torvik |
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Deep Motif Dashboard: Visualizing and Understanding Genomic Sequences Using Deep Neural Networks |
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254 | (12) |
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Meta-Analysis of Continuous Phenotypes Identifies a Gene Signature that Correlates with COPD Disease Status |
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266 | (10) |
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Predictive Modeling of Hospital Readmission Rates Using Electronic Medical Record-Wide Machine Learning: A Case-Study Using Mount Sinai Heart Failure Cohort |
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276 | (12) |
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Learning Parsimonious Ensembles for Unbalanced Computational Genomics Problems |
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288 | (12) |
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Methods for Clustering Time Series Data Acquired from Mobile Health Apps |
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300 | (12) |
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A New Relevance Estimator for the Compilation and Visualization of Disease Patterns and Potential Drug Targets |
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312 | (12) |
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Network Map of Adverse Health Effects Among Victims of Intimate Partner Violence |
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324 | (12) |
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Discovery of Functional and Disease Pathways by Community Detection in Protein-Protein Interaction Networks |
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336 | (12) |
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Precision Medicine: Data And Discovery For Improved Health And Therapy |
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348 | (8) |
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Opening the Door to the Large Scale Use of Clinical Lab Measures for Association Testing: Exploring Different Methods for Defining Phenotypes |
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356 | (12) |
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A Powerful Method for Including Genotype Uncertainty in Tests of Hardy-Weinberg Equilibrium |
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368 | (12) |
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Temporal Order of Disease Pairs Affects Subsequent Disease Trajectories: The Case of Diabetes and Sleep Apnea |
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380 | (10) |
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MicroRNA-Augmented Pathways (mirAP) and Their Applications to Pathway Analysis and Disease Subtyping |
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390 | (12) |
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Frequent Subgraph Mining of Personalized Signaling Pathway Networks Groups Patients with Frequently Dysregulated Disease Pathways and Predicts Prognosis |
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402 | (12) |
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Human Kinases Display Mutational Hotspots at Cognate Positions Within Cancer |
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414 | (12) |
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MUSE: A Multi-locus Sampling-based Epistasis Algorithm for Quantitative Genetic Trait Prediction |
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426 | (12) |
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ceRNA Search Method Identified a MET-activated Subgroup Among EGFR DNA Amplified Lung Adenocarcinoma Patients |
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438 | (11) |
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Improved Performance of Gene Set Analysis on Genome-Wide Transcriptomics Data when Using Gene Activity State Estimates |
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449 | (12) |
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methylDMV: Simultaneous Detection of Differential DNA Methylation and Variability with Confounder Adjustment |
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461 | (12) |
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Identifying Cancer Driver Genes Through Shared Mendelian Disease Pathogenic Variants and Cancer Somatic Mutations |
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473 | (12) |
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Identifying Cancer Specific Metabolic Signatures Using Constraint-Based Models |
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485 | (12) |
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Differential Pathway Dependency Discovery Associated with Drug Response across Cancer Cell Lines |
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497 | (12) |
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A Methylation-to-Expression Feature Model for Generating Accurate Prognostic Risk Scores and Identifying Disease Targets in Clear Cell Kidney Cancer |
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509 | (12) |
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De Novo Mutations in Autism Implicate the Synaptic Elimination Network |
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521 | (12) |
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Identifying Genetic Associations with Variability in Metabolic Health and Blood Count Laboratory Values: Diving into the Quantitative Traits by Leveraging Longitudinal Data from an EHR |
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533 | (12) |
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Strategies for Equitable Pharmacogenomic-Guided Warfarin Dosing Among European and African American Individuals in a Clinical Population |
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545 | (12) |
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Single-Cell Analysis And Modelling Of Cell Population Heterogeneity |
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557 | (7) |
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Production of a Preliminary Quality Control Pipeline for Single Nuclei RNA-Seq and Its Application in the Analysis of Cell Type Diversity of Post-Mortem Human Brain Neocortex |
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564 | (12) |
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Tracing Co-Regulatory Network Dynamics in Noisy, Single-Cell Transcriptome Trajectories |
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576 | (12) |
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An Updated Debarcoding Tool for Mass Cytometry with Cell Type-Specific and Cell Sample-Specific Stringency Adjustment |
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588 | (11) |
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Mapping Neuronal Cell Types Using Integrative Multi-Species Modeling of Human and Mouse Single Cell RNA Sequencing |
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599 | (12) |
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A Spatiotemporal Model to Simulate Chemotherapy Regimens for Heterogeneous Bladder Cancer Metastases to the Lung |
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611 | (12) |
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Kimberly R. Kanigel Winner |
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Scalable Visualization for High-dimensional Single-cell Data |
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623 | (12) |
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Workshops |
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Harnessing Big Data for Precision Medicine: Infrastructures and Applications |
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635 | (5) |
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The Training of Next Generation Data Scientists in Biomedicine |
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640 | (6) |
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No-Boundary Thinking in Bioinformatics |
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646 | (3) |
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Clarlynda Williams-Devane |
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Open Data for Discovery Science |
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649 | |
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