Comparative Genomics: 22nd RECOMB International Workshop, RECOMB-CG 2025, Seoul, South Korea, April 2425, 2025, Proceedings [Pehme köide]

Cancer genomics


.- Novel Driver Mutations in GCB Lymphoma Patients That Affect Transcription
Factors Binding.
.- Inferring Phylogenetic Trees of Cancer Evolution from Longitudinal
Single-Cell Copy Number Profiles.


Homology and Reconciliation


.- Tree decomposition for reconstructing ancestral RNA sequences of multiple
families.
.- Whole-genome duplication detection with phylogenomics reconciliation: a
scalable approach.
.- A Sankoff-Rousseau-like Algorithm for Minimizing Lateral Gene Transfers
and Losses on Single Origin Characters.
.- tMHG-Finder: Tree-guided Maximal Homologous Group Finder for Bacterial
Genomes.


Phylogenetics


.- Phylogenetic Network Diversity Parameterized by Reticulation Number and
Beyond.
.- On the robustness to gene tree rooting (or lack thereof) of triplet-based
species tree estimation methods.
.- Exact Counts of Binary Phylogenetic Networks with Two and Three
Reticulation Events.
.- Ancestral pangenomes and their phylogenetic reconstruction.
.- QT-WEAVER: Correcting quartet distribution improves phylogenomic analyses
despite gene tree estimation error.
.- Fast calculation of cherry distance on level-1 orchard networks:
optimization, heuristic and implementation.


Sequence analysis



.- Detecting and Mapping Local Model Violations During Biomolecular Sequence
Analysis: a RE sampling and Visual EvALuation Approach.
.- A simple way to find related sequences with position-specific
probabilities.
.- Position Specific Scoring Is All You Need? Revisiting Protein Sequence
Classification Tasks.


Epidemiology


.- Residual immunity and seasonality of an epidemic.
.- Adapting the cov2clusters tool for clustering MPOXV whole genome
sequences.


Genome evolution


.- Probability-based sequence comparison finds the oldest ever nuclear
mitochondrial DNA segments in mammalian genomes.
.- Unraveling Insect Immunity: A Cross-Order Comparative Genomic Analysis of
Key Immune Proteins.
.- Analyzing Sequence Similarity Distributions in Salmonidae: A Branching
Process Approach.
.- Evolutionary Reconstruction of Hormone-bHLH Regulatory Networks in
Solanaceae: Phylogenomic Insights from PSTVd-Tomato Interactions.