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1 | (32) |
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Chapter 1 Introduction and Book Overview |
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3 | (6) |
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Organization of the Second Volume |
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3 | (5) |
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8 | (1) |
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Chapter 2 Methods Used in this Book |
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9 | (24) |
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i Basic Principles of Classification |
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9 | (4) |
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ii Main Ideas of the SVM Algorithm for Binary Classification |
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13 | (3) |
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iii Mathematical Formulation of SVMs |
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16 | (1) |
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iv Theoretical Underpinnings of SVMs |
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17 | (1) |
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v Model Selection and Accuracy Estimation |
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18 | (5) |
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23 | (1) |
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vii Statistical Comparison of Classification Results |
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24 | (3) |
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viii SVMs for Variable/Feature Selection |
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27 | (3) |
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ix Other Variable/Feature Selection Methods Used in this Book |
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30 | (3) |
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Part II Case Studies and Comparative Evaluation in High-Throughput Genomic Data |
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33 | (62) |
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Chapter 3 Application and Comparison of SVMs and Other Methods for Multicategory Microarray-Based Cancer Classification |
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35 | (16) |
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36 | (7) |
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43 | (6) |
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49 | (2) |
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Chapter 4 Comparison of SVMs and Random Forests for Microarray-Based Cancer Classification |
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51 | (14) |
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52 | (5) |
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57 | (5) |
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62 | (3) |
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Chapter 5 Comparison of SVMs and Kernel Ridge Regression for Microarray-Based Cancer Classification |
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65 | (8) |
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65 | (4) |
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69 | (3) |
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72 | (1) |
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Chapter 6 Application and Comparison of SVMs and Other Methods for Multicategory Classification in Microbiomics |
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73 | (14) |
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74 | (7) |
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81 | (5) |
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86 | (1) |
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Chapter 7 Application to Assessment of Plasma Proteome Stability |
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87 | (8) |
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87 | (5) |
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92 | (1) |
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93 | (2) |
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Part III Case Studies and Comparative Evaluation in Text Data |
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95 | (44) |
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Chapter 8 Application and Comparison of SVMs and Other Methods for Retrieving High-Quality Content-Specific Articles |
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97 | (10) |
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98 | (5) |
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103 | (2) |
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105 | (2) |
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Chapter 9 Application and Comparison of SVMs and Other Methods for Identifying Unproven Cancer Treatments on the Web |
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107 | (6) |
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108 | (3) |
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111 | (1) |
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112 | (1) |
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Chapter 10 Application to Predicting Future Article Citations |
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113 | (10) |
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113 | (3) |
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116 | (5) |
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121 | (2) |
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Chapter 11 Application to Classifying Instrumentality of Article Citations |
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123 | (8) |
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124 | (3) |
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127 | (3) |
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130 | (1) |
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Chapter 12 Application and Comparison of SVMs and Other Methods for Identifying Drug-Drug Interactions-Related Literature |
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131 | (8) |
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131 | (4) |
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135 | (3) |
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138 | (1) |
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Part IV Case Studies with Clinical Data |
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139 | (22) |
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Chapter 13 Application to Predicting Clinical Laboratory Values |
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141 | (10) |
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141 | (6) |
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147 | (3) |
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150 | (1) |
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Chapter 14 Application to Modeling Clinical Judgment and Guideline Compliance in the Diagnosis of Melanoma |
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151 | (10) |
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151 | (4) |
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155 | (5) |
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160 | (1) |
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Part V Other Comparative Evaluation Studies of Broad Applicability |
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161 | (30) |
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Chapter 15 Using SVMs for Causal Variable Selection |
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163 | (14) |
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164 | (3) |
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167 | (9) |
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176 | (1) |
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Chapter 16 Application and Comparison of SVM-RFE and GLL Methods for Variable Selection for Classification |
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177 | (14) |
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178 | (4) |
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182 | (5) |
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187 | (2) |
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Conclusions and Lessons Learned |
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189 | (2) |
Bibliography |
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191 | (1) |
Additional Reading for Presented Case Studies and Benchmarks |
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191 | (2) |
List of References |
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193 | (6) |
Index |
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199 | |