Plant Long Non-Coding RNAs: Methods and Protocols 2019 ed. [Kõva köide]

An Overview of Methodologies in Studying lncRNAs in the High-Throughput
Era: When Acronyms ATTACK!.- Analysis of siRNA Precursors Generated by RNA
Polymerase IV and RNA-Dependent RNA Polymerase 2 in Arabidopsis.-
Identification of Long Non-Coding RNAs in the Developing Endosperm of
Maize.- RNA Isolation and Analysis of lncRNAs from Gametophytes of
Maize.- Improved Method of RNA Isolation from Laser Capture Microdissection
(LCM) Derived-Plant Tissues.- Medium Throughput RNA In Situ Hybridization of
Serial Sections from Paraffin-Embedded Tissue Microarrays.- Purification and
Functional Analysis of Plant Long Non-Coding RNAs (lncRNA).- The Involvement
of Long Non-Coding RNAs in Response to Plant Stress.- Subcellular
Localization and Functions of Plant lncRNAs in Drought and Salt Stress
Tolerance.- Discovery, Identification, and Functional Characterization of
Plant Long Intergenic Non-Coding RNAs after Virus Infection.- Bioinformatics
Approachesto Studying Plant Long Non-Coding RNAs (lncRNAs): Identification
and Functional Interpretation of lncRNAs from RNA-seq Data
Sets.- Identification of Novel lincRNA and Co-Expression Network Analysis
using RNA Sequencing Data in Plants.- An Easy-to-Follow Pipeline for Long
Non-Coding RNA Identification: A Case Study in Diploid Strawberry Fragaria
vesca.- Reference-Based Identification of Long Non-Coding RNAs in Plants with
Strand-Specific RNA-Sequencing Data.- NAMS: Non-Coding Assessment in
Magnoliophyta Species.- De novo Plant Transcriptome Assembly and Annotation
using Illumina RNA-seq Reads.- Identification of Long Non-Coding RNA-Protein
Interactions through In Vitro RNA Pull-Down Assay with Plant Nuclear
Extracts.- Analysis of Interaction between Long Non-Coding RNAs and Protein
by RNA-Immunoprecipitation in Arabidopsis.- Trimolecular Fluorescence
Complementation (TriFC) Assay for Visualization of RNA-Protein Interaction in
Plants.- In Vivo Genome-Wide RNA Structure Probing with
Structure-seq2.- Using Protein Interaction Profile Sequencing (PIP-seq) to
Identify RNA Secondary Structure and RNA-Protein Interaction Sites of Long
Non-Coding RNAs in Plants.- Computationally Characterizing Protein Bound Long
Non-Coding RNAs and their Secondary Structure using Protein Interaction
Profile Sequencing (PIP-seq) in Plants.- Stalking Structure in Plant Long
Non-Coding RNAs.- Transcriptome-Wide Mapping 5-methylcytosine by m5C RNA
Immunoprecipitation Followed by Deep Sequencing in Plant.- A Walkthrough to
the Use of GreeNC: The Plant lncRNA Database.- CANTATAdb 2.0: Expanding the
Collection of Plant Long Non-Coding RNAs.- Experimentally Validated Plant
lncRNAs in EVLncRNAs Database.- In Situ Hi-C for Plants: An Improved Method
to Detect Long-Range Chromatin Interactions.