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Practical Atlas for Bacterial Identification 2nd edition [Kõva köide]

(Droycon Bioconcepts Inc., Regina, Saskatchewan, Canada)
  • Formaat: Hardback, 232 pages, kõrgus x laius: 229x152 mm, kaal: 770 g, 128 black & white illustrations, 25 black & white tables
  • Ilmumisaeg: 17-Mar-2010
  • Kirjastus: CRC Press Inc
  • ISBN-10: 1420087975
  • ISBN-13: 9781420087970
Teised raamatud teemal:
Practical Atlas for Bacterial Identification 2nd editionSuurem pilt
  • Formaat: Hardback, 232 pages, kõrgus x laius: 229x152 mm, kaal: 770 g, 128 black & white illustrations, 25 black & white tables
  • Ilmumisaeg: 17-Mar-2010
  • Kirjastus: CRC Press Inc
  • ISBN-10: 1420087975
  • ISBN-13: 9781420087970
Teised raamatud teemal:
Püsilink: https://www.kriso.ee/db/9781420087970.html
Märksõnad:
Published nearly ten years ago, the first edition of Practical Atlas for Bacterial Identification broke new ground with the wealth of detail and breadth of information it provided. The second edition is poised to do the same. Differing fundamentally from the first edition, this book begins by introducing the concept of bacteria community intelligence as reflected in corrosion, plugging, and shifts in the quality parameters in the product whether it be water, gas, oil, or even air. It presents a new classification system for bacterial communities based upon their effect and activities, and not their composition.





The book represents a radical departure from the classical reductionist identification of bacteria dominated by genetic and biochemical analyses of separated strains. The author takes a holistic approach based on form, function, and habitat of communities (consorms) of bacteria in real environments. He uses factors related to the oxidation-reduction potential at the site where the consorm is active and the viscosity of the bound water within that consorm to position their community structures within a two-dimensional bacteriological positioning system (BPS) that then allows the functional role to be defined. This book has an overarching ability to define bacterial activities as consorms in a very effective and applied manner useful to an applied audience involved in bacterial challenges.





Organized for ease of use, the book allows readers to start with the symptom, uncover the bacterial activities, and then indentify the communities distinctly enough to allow management and control practices that minimize the damage. The broad spectrum approach, new to this edition, lumps compatible bacteria together into a relatively harmonious consortia that share a common primary purpose. It gives a big picture view of the role of bacteria not as single strains but collectively as communities and uses this information to provide key answe
List of Tables xiii
List of Figures xv
List of Plates xxi
Preface xxv
Acknowledgments xxix
Author xxxi
Chapter 1 Bacterial Communities by Location and Function 1
1.1 Introduction to Layering of Bacterial Communities
1
1.2 Factors Significantly Influencing Bacterial Activities and Nutrient Cycles
4
1.3 Bacteria: Human Perspectives
6
Chapter 2 Common Bacteriologically Initiated Events 11
2.1 Historical Overview
11
2.2 Challenges of Classifying "Unculturables"
13
2.3 Evolutionary Trends toward Bacterial Diversity
14
2.4 Two-Dimensional Grid Definition of Bacterial Communities
15
2.5 Establishment of Grid Location Points for Bacterial Atlas
20
2.6 Summary of Bacterial Community Grid Positioning Atlas Principles
21
Chapter 3 Bacteria Are Everywhere: Classification of Alpha Groups of Bacterial Consorms 23
3.1 Historical Overview
23
3.2 Definitions of Alpha-Based Bacterial Consortia
27
3.3 Alpha One: Bionucleating Dispersed Consorms [ FPL (FMV:FCP) 22-04]
30
3.4 Alpha Two: Organic Bioconcreting Consorms [ FPL (FMV:FCP) 22-16]
31
3.5 Alpha Three: Inorganic Bioconcreting Consorms [ FPL (FMV:FCP) 13-21)
32
3.6 Alpha Four: Carbon-Reducing Consorms [ FPL (FMV:FCP) 06-27]
33
3.7 Alpha Five: Carbon-Oxidizing Consorms [ FPL (FMV:FCP) 13-07]
34
3.8 Alpha Six: Hyperbaric Dispersed Bionucleating Consorms [ FPL (FMV:FCP) 01-03]
34
3.9 Summary
35
Chapter 4 Preliminary Differentiation of Alpha Bacterial Consorms 37
4.1 Introduction
37
4.2 Alpha One: Bionucleating Dispersed Consorms (FPL 1, 22-04)
38
4.2.1 Principal Alpha One Consormial Activities
38
4.3 Alpha Two: Organic Bionucleating Consorms (FPL 2, 22-16)
39
4.3.1 Principal Alpha Two Consormial Activities
40
4.4 Alpha Three: Inorganic Bionucleating Consorms (FPL 3, 13-21)
44
4.4.1 Principal Alpha Three Consormial Activities
45
4.5 Alpha Four: Carbon-Reducing Consorms (FPL 4, 06-27)
49
4.5.1 Principal Alpha Four Consormial Activities
50
4.6 Alpha Five: Carbon-Oxidizing Consorms (FPL 5, 13-07)
52
4.6.1 Principal Alpha Five Consormial Activities
52
4.7 Alpha Six: Hyperbaric Dispersed Bionucleating Consorms (FPL 6, 01-03)
53
Chapter 5 Environmental Dynamics of Bacterial Consorms 55
5.1 Introduction
55
5.2 Defining Bacteriologically Dominated Consorms
56
5.3 Categorization of Consorms
57
5.3.1 Location within Environment
58
5.3.2 Generated Colors
59
5.3.3 Texture and Porosity
62
5.3.4 Inorganic and Organic Chemistry
64
5.3.5 Water Form and Content
66
5.3.6 Odors Emanating from Consorms
66
5.3.7 Identification of Recovered Bacterial Consorms
67
5.3.8 Time-Scaled Maturation
68
Chapter 6 Bacterial Consormial Challenges 71
6.1 Introduction
71
6.2 Identification of Consorms
72
6.3 Determining Probability of Consormial Activity
73
6.4 Symptoms of Consormial Intrusions
77
6.5 Quantification of Consormial Intrusions into Environment
78
6.6 Causes and Effects of Consorm Intrusions in Impacted Environment
79
6.7 Consorm Sampling Protocols
83
Chapter 7 Detailed Identification of Bacterial Consorms 85
7.1 Introduction
85
7.2 Defining Bacterial Consorms by Form, Function, and Habitat
86
1, 22-03 CLD (Clouds)
88
1, 17-15 CMT (Comets)
88
1, 19-06 FOM (Foam)
88
1, 16-12 ICE (Ice)
89
1, 16-03 LNG (Lightning)
89
1, 19-12 SNO (Snow)
89
2, 12-17 ABS (Abscesses)
90
2, 13-10 BOL (Boils)
90
2, 19-07 BCH (Bronchitis)
90
2, 08-20 CBC (Carbuncles)
91
2, 11-14 CCD (Carietic Condition)
91
2, 15-07 CLS (Cloudiness)
91
2, 11-18 CHR (Cholera)
92
2, 16-13 CLB (Coliform Bacteria)
92
2, 15-18 CLW (Colloidal Water)
92
2, 18-13 DRR (Diarrhea)
93
2, 10-12 FCB (Fecal Coliform Bacteria)
93
2, 07-23 FEC (Feces)
93
2, 10-08 KDS (Kidney Stones)
93
2, 22-12 LMN (Luminescent Bacteria)
94
2, 09-15 MIC. (Microbiologically Influenced Corrosion)
94
2, 18-16 NCR (Necrosis)
95
2, 22-21 PMP (Pimples)
95
2, 19-21 PLG (Plugging)
95
2, 23-14 PEY (Pink Eye)
96
2, 16-18 PUS (Pus)
96
2, 06-18 ROE (Rotten Eggs)
96
2, 14-15 ROT (Rotting)
97
2, 16-21 RZZ (Rhizosphere)
97
2, 22-07 SHN (Sheen)
97
2, 23-21 SKN (Skin)
98
2, 11-16 SLT (Silt)
98
2, 21-22 SLM (Slime)
98
2, 24-13 TCT (Thatch)
98
2, 15-13 TBD (Turbidity)
99
2, 07-20 ULC (Ulcers)
99
2, 12-07 URN (Urinary Tract Infections)
100
2, 12-13 WLT (Wilt)
100
3, 10-21 BPL (Black Plug Layer)
100
3, 10-27 BBR (Blueberries)
101
3, 03-16 BWR (Black Water)
101
3, 19-03 CRB (Carbonates)
101
3, 05-27 CGG (Clogging)
102
3, 06-16 CRS (Corrosion)
102
3, 18-25 CCR (Concretions)
103
3, 20-28 FRD (Ferric-Rich Deposits)
103
3, 22-18 IPN (Iron Pan)
104
3, 18-14 LSL (Lateral Slime Layer)
104
3, 15-28 MGN (Manganese Nodules)
104
3, 18-19 OCR (Ochres)
105
3, 10-30 PGI (Pig Iron)
105
3, 03-19 PFR (Perforation)
106
3, 06-24 PTG (Pitting)
106
3, 19-21 PLG (Plugging)
106
3, 19-26 RST (Rusticles)
108
3, 10-10 SBL (Sand Boils)
108
3, 15-17 TCL (Tubercles)
109
4, 05-25 BAP (Black Asphaltene-Rich Plugs)
110
4, 04-20 CDR (Carbon Dioxide Reducers)
110
4, 05-17 COL (Coal)*
111
4, 06-22 BNG (Biogenic Natural Gas)
111
4, 03-13 BSR (Black Smokers)
112
4, 01-28 OIL (Oil)
112
4, 07-19 PET (Peat)
113
5, 15-10 GHY (Gas Hydrates)
114
Chapter 8 Biochemical Methods for Identification of Consorms 115
8.1 Introduction
115
8.2 Determination of Consormial Activity by ATP Analysis
115
8.3 RASI Protocol for Determining Potential ATP Activity
117
8.3.1 Differentiation of RASI Procedures
119
8.3.2 RASI-MIDI Protocols for Identifying Bacterial Consorms
120
Chapter 9 Identifying Bacterial Consorms Using BART 123
9.1 Introduction
123
9.2 Development of BART to Determine Bacterial Activity
124
9.3 BART Setup
126
9.4 Red Cap: Iron-Related Bacteria (IRB BART)
128
9.4.1 Qualitative Interpretation of IRB Reaction Patterns
129
9.5 Black Cap: Sulfate-Reducing Bacteria (SRB BART)
131
9.6 Lime Green Cap: Slime-Forming Bacteria (SLYM BART)
133
9.7 Dark Blue Cap: Heterotrophic Bacteria (HAB BART)
135
9.8 Grey Cap: Denitrifying Bacteria (DN BART)
136
9.9 White Cap: Nitrifying Bacteria (N BART)
137
9.10 Purple Cap: Acid-Producing Bacteria (APB BART)
139
9.11 Yellow Cap: Fluorescent Pseudomonad Bacteria (FLOR BART)
140
9.12 Comparison of BART and Other Bacteriological Enumeration Methods
141
9.12.1 Comparison of BART, HPC, and ATP
141
9.12.2 Environmental Technology Verification (Canada)
142
9.12.3 Comparison of BART and Other Microbiological Tests
142
Chapter 10 Introduction to Grid-Formatted Bacteriological Atlas 145
10.1 Focal Point Locations for Bacterial Consorms
145
10.2 Differentiation of Grid Atlas into Six Major Consormial Groups
145
10.3 Alpha One: Bionucleating Dispersed Consorms
146
10.4 Alpha Two: Organic Bionucleating Consorms
149
10.5 Alpha Three: Inorganic Bioconcreting Consorms
153
10.6 Alpha Four: Carbon Reducing Consorms
155
10.7 Alpha Five: Carbon Oxidizing Consorms
158
10.8 Alpha Six: Hyperbaric Dispersed Bionucleating Consorms
160
10.9 Differentiation of Major Consorms by Grid Positions and BART Reactions
160
Chapter 11 Defining Bacterial Consorms in Gridded Atlas Format 175
11.1 Introduction
175
11.2 Basic fmv: fcP Grid
178
11.3 Limitations of Animal Habitats on Gridded Atlas
178
11.4 Limitations of Plant Habitats on Gridded Atlas
179
11.5 Dominant Prokaryotic Consormial Domains
181
11.6 Dominant Microbiological Eukaryotic Domains
181
11.7 Bacterial Consorms Associated with Plant Activities
183
11.8 Bacterial Consorms Associated with Non-Herbivoral Intestinal Streaming
185
11.9 Bacterial Consorms Involved in Spoilage of Foods
187
11.10 Mammalian Consormial Non-Enteric Pathogens on Gridded Atlas
189
11.11 Bacterial Consorms Associated with Water Quality Issues
190
11.12 Bacterial Consorms Involved in Oil, Gas, and Coal Production in Geological Media
191
11.13 Bacterial Consormial Interceptors in Upward Migration of Hydrocarbons
192
11.14 Bacterial Interception of Groundwater Flows in Porous and Fractured Media
193
Chapter 12 Natural Bacteriological Consorms 197
12.1 Introduction
197
12.2 1, 22-03 CLD (Clouds)
197
12.3 1, 16-12 ICE (Ice)
199
12.4 3, 18-25 CCR (Concretions)
200
12.5 3, 18-19 OCR (Ochres)
201
12.6 3, 06-24 PTG (Pitting)
206
12.7 3, 03-19 PFR (Perforation)
209
12.8 2, 09-15 MIC (Microbiologically Influenced Corrosion)
211
12.9 3, 10-21 BPL (Black Plug Layers)
214
12.10 3, 10-27 BBR ("Blueberries")
216
12.11 3, 19-26 RST (Rusticles)
217
12.12 1, 19-06 FOM (Foam)
219
12.13 3, 15-17 TCL (Tubercles)
221
12.14 3, 18-14 LSL (Lateral Slime Layer)
221
12.15
5. 15-10 GHY (Gas Hydrates)
222
12.16 Culturing Bacterial Consorms
223
12.17 Rehabilitation
225
12.18 Monitoring Methodologies
229
Suggestions for Further Reading 235
Appendix Alpha Two Traditional Atlas Concept 239
Index 289
Roy Cullimore has a PhD in Agricultural Microbiology and went on to develop a number of patents, edited a series of books for CRC Press on Sustainable Water Wells, and has published in the area of applied microbial ecology. Cullimore was involved in deep-ocean research and presently has seven experiments on the RMS Titanic together with experiments on other ship wrecks to determine the rates of decay.