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Transcriptome Data Analysis [Pehme köide]

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  • Formaat: Paperback / softback, 394 pages, kõrgus x laius: 254x178 mm, 76 Illustrations, color; 3 Illustrations, black and white
  • Sari: Methods in Molecular Biology
  • Ilmumisaeg: 28-Jul-2025
  • Kirjastus: Humana
  • ISBN-10: 1071638882
  • ISBN-13: 9781071638880
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Transcriptome Data Analysis
  • Formaat: Paperback / softback, 394 pages, kõrgus x laius: 254x178 mm, 76 Illustrations, color; 3 Illustrations, black and white
  • Sari: Methods in Molecular Biology
  • Ilmumisaeg: 28-Jul-2025
  • Kirjastus: Humana
  • ISBN-10: 1071638882
  • ISBN-13: 9781071638880
Teised raamatud teemal:
This detailed volume presents a comprehensive exploration of the advances in transcriptomics, with a focus on methods and pipelines for transcriptome data analysis. In addition to well-established RNA sequencing (RNA-Seq) data analysis protocols, the chapters also examine specialized pipelines, such as multi-omics data integration and analysis, gene interaction network construction, single-cell trajectory inference, detection of structural variants, application of machine learning, and more. As part of the highly successful Methods in Molecular Biology series, chapters include the kind of detailed implementation advice that leads to best results in the lab. 





 





Authoritative and practical, Transcriptome Data Analysis serves as an ideal resource for educators and researchers looking to understand new developments in the field, learn usage of the protocols for transcriptome data analysis, and implement the tools or pipelines to address relevant problemsof their interest.





 





Chapter 4 is available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.
An RNA-Seq Data Analysis Pipeline.- Inferring Interaction Networks from
Transcriptomic Data: Methods and Applications.- EMPathways2: Estimation of
Enzyme Expression and Metabolic Pathway Activity Using RNA-Seq Reads.-
Efficient and Powerful Integration of Targeted Metabolomics and
Transcriptomics for Analyzing the Metabolism Behind Desirable Traits in
Plants.- A RNAseq Data Analysis for Differential Gene Expression Using
HISAT2-stringTie-Ballgown Pipeline.- RNA-Sequencing Experimental Analysis
Workflow Using Caenorhabditis elegans.- Inferring Novel Cells in Single Cell
RNA Sequencing Data.- Unsupervised Single-Cell Clustering with Asymmetric
Within-Sample Transformation and Per Cluster Supervised Features Selection.-
Inferring Tree-Shaped Single-Cell Trajectories with Totem.- Zebrafish
Thrombocyte Transcriptome Analysis and Functional Genomics.- Plant
Transcriptome Analysis with HISAT-StringTie-Ballgown and TopHat-Cufflinks
Pipelines.- Cotton Meristem Transcriptomes: Constructing an RNA-Seq Pipeline
to Explore Crop Architecture Regulation.- Detecting Somatic
Insertions/Deletions (Indels) Using Tumor RNA-Seq Data.- A Protocol for the
Detection of Fusion Transcripts Using RNA-Sequencing Data.- GAN Learning
Methods for Bulk RNA-Seq Data and Their Interpretive Application in the
Context of Disease Progression.- Protocol for Analyzing Epigenetic Regulation
Mechanisms in Breast Cancer.- Identification of Virus-Derived Small
Interfering RNAs (vsiRNAs) from Infected sRNA-Seq Samples.- Incorporating
Sequence-Dependent DNA Shape and Dynamics into Transcriptome Data Analysis.-
Utilizing RNA-Seq Data to Infer Bacterial Transcription Termination Sites and
Validate Predictions.- RNA-Seq Analysis of Mammalian Prion Disease.- In
Silico Identification of tRNA Fragments, Novel Candidates for Cancer
Biomarkers, and Therapeutic Targets.