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1 Bayesian Inference and Markov chain Monte Carlo |
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1.3 Monte Carlo Integration |
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1.4 Random variable generation |
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1.5 Markov chain Monte Carlo |
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2.3 Implementation strategies and acceleration methods |
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3 The Metropolis-Hastings Algorithm |
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3.1 The Metropolis-Hastings Algorithm |
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3.2 Some Variants of the Metropolis-Hastings Algorithm |
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3.3 Reversible Jump MCMC Algorithm for Bayesian Model Selection |
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3.4 Metropolis-within-Gibbs Sampler for ChIP-chip Data Analysis |
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4 Auxiliary Variable MCMC Methods |
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4.4 The Swendsen-Wang Algorithm |
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4.7 The Exchange Algorithm |
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4.9 Monte Carlo MH Sampler |
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5 Population-Based MCMC Methods |
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5.1 Adaptive Direction Sampling |
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5.2 Conjugate Gradient Monte Carlo |
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5.3 Sample Metropolis-Hastings Algorithm |
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5.5 Evolutionary Monte Carlo |
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5.6 Sequential Parallel Tempering for Simulation of High Dimensional |
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6.2 Dynamically Weighted Importance Sampling |
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6.3 Monte Carlo Dynamically Weighted Importance Sampling |
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6.4 Sequentially Dynamically Weighted Importance Sampling |
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7 Stochastic Approximation Monte Carlo |
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7.1 Multicanonical Monte Carlo |
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7.2 1/k-Ensemble Sampling |
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7.3 Wang-Landau Algorithm |
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7.4 Stochastic Approximation Monte Carlo |
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7.5 Applications of Stochastic Approximation Monte Carlo |
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7.6 Variants of Stochastic Approximation Monte Carlo |
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7.7 Theory of Stochastic Approximation Monte Carlo |
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7.8 Trajectory Averaging: Toward the Optimal Convergence Rate |
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8 Markov Chain Monte Carlo with Adaptive Proposals |
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8.1 Stochastic Approximation-based Adaptive Algorithms |
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8.2 Adaptive Independent Metropolis-Hastings Algorithms |
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8.3 Regeneration-based Adaptive Algorithms |
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8.4 Population-based Adaptive Algorithms |
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