| Preface |
|
xvii | |
| Acknowledgments |
|
xix | |
| Author |
|
xxi | |
| Chapter 1 Laboratory Ethics in Plant Bacteriology Laboratory: Instruments and General Guidelines |
|
1 | (14) |
|
1.1 Ethics in the Laboratory |
|
|
1 | (1) |
|
|
|
1 | (1) |
|
|
|
1 | (1) |
|
|
|
1 | (1) |
|
|
|
2 | (1) |
|
1.1.5 Maintenance of Laboratory Hygiene |
|
|
2 | (1) |
|
1.2 Laboratory Instruments |
|
|
2 | (6) |
|
1.2.1 Maintenance of Instruments |
|
|
2 | (1) |
|
|
|
3 | (1) |
|
1.2.3 Applied Instruments |
|
|
4 | (4) |
|
1.3 Necessary Miscellaneous Instruments |
|
|
8 | (1) |
|
|
|
9 | (6) |
| Chapter 2 Confirmation of Bacterial Pathogen in Diseased Samples |
|
15 | (4) |
|
|
|
15 | (1) |
|
|
|
15 | (1) |
|
|
|
16 | (1) |
|
2.4 By Staining of Crushed Disease Portion |
|
|
17 | (2) |
| Chapter 3 Histopathology of Bacterial Infection |
|
19 | (6) |
|
3.1 Determination of the Location of Bacterial Pathogens in Host |
|
|
19 | (1) |
|
3.2 Preparation of Microtome Sections and Staining for Histological Studies |
|
|
20 | (2) |
|
3.3 Study of Changes in Chemical Constituents of the Affected Plant Tissues |
|
|
22 | (3) |
|
3.3.1 Degradation in Cellulose |
|
|
22 | (1) |
|
3.3.2 Degradation of Pectic Substances |
|
|
22 | (1) |
|
3.3.3 Degradation of Protein |
|
|
23 | (1) |
|
3.3.4 Degradation of Lignin |
|
|
23 | (2) |
| Chapter 4 Sterilization |
|
25 | (4) |
|
4.1 Sterilization of Glassware |
|
|
25 | (1) |
|
4.2 Sterilization of Medium |
|
|
25 | (1) |
|
|
|
25 | (1) |
|
|
|
26 | (1) |
|
4.3 Sterilization of Soil |
|
|
26 | (1) |
|
4.3.1 Sterilization in Steam without Pressure |
|
|
26 | (1) |
|
4.3.2 Sterilization with Chemical Vapors |
|
|
27 | (1) |
|
4.3.3 Sterilization with Solar Heat |
|
|
27 | (1) |
|
4.4 Sterilization of the Working Place |
|
|
27 | (2) |
|
|
|
27 | (2) |
| Chapter 5 Medium for Isolation of Plant Pathogenic Bacteria |
|
29 | (6) |
|
5.1 Basic Liquid Media (Broth) for the Routine Cultivation of Bacteria |
|
|
29 | (1) |
|
5.2 General Medium for Routine Cultivation of Bacteria |
|
|
30 | (1) |
|
5.2.1 Preparation of Nutrient Sucrose Agar (NSA) Media |
|
|
30 | (1) |
|
5.3 Selective and Differential Media |
|
|
31 | (3) |
|
|
|
31 | (7) |
|
5.3.1.1 Special Media for Xanthomonas |
|
|
31 | (1) |
|
5.3.1.2 Special Medium for Pseudomonas fluorescens (King's B Medium) |
|
|
31 | (1) |
|
5.3.1.3 Special Medium for Isolation of Pectolytic Erwinia |
|
|
32 | (2) |
|
5.3.1.4 Special Medium for Agrobacterium |
|
|
34 | (1) |
|
5.3.1.5 Yeast Glucose Chalk-Agar Medium for Maintenance of Bacterial Cultures |
|
|
34 | (1) |
|
5.4 Preparation of Slants |
|
|
34 | (1) |
| Chapter 6 Isolation of Bacterial Plant Pathogens |
|
35 | (4) |
|
6.1 From Diseased Plant Sample |
|
|
35 | (2) |
|
6.2 From Disease Field Soil Sample |
|
|
37 | (1) |
|
6.3 From Field Water Sample |
|
|
37 | (1) |
|
6.4 From Infected Seed Material |
|
|
38 | (1) |
|
6.4.1 Isolation of Externally Seedborne Bacteria |
|
|
38 | (1) |
|
6.4.2 Isolation of Internally Seedborne Bacteria |
|
|
38 | (1) |
| Chapter 7 Purification of Plant Pathogenic Bacterial Cultures |
|
39 | (4) |
|
7.1 Selection of Single Bacterial Colonies |
|
|
39 | (1) |
|
7.2 Picking of Single Colonies and Subculture |
|
|
39 | (2) |
|
7.3 Checking the Purity of the Isolated Culture |
|
|
41 | (2) |
| Chapter 8 Rapid Assessment of Plant Pathogenic Nature of Bacterial Isolates |
|
43 | (2) |
|
8.1 By Hypersensitive Reaction on a Tobacco Plant |
|
|
43 | (1) |
|
8.2 By Hypersensitive Reaction on a Non-Host Plant |
|
|
43 | (1) |
|
8.3 By Reaction of Bacteria on Soft Fruits |
|
|
44 | (1) |
| Chapter 9 Determination of Pathogenicity of the Isolated Bacterial Culture on Natural Host Plants |
|
45 | (4) |
|
9.1 By Infiltration Method |
|
|
45 | (1) |
|
9.2 By Swab Inoculation Method |
|
|
45 | (1) |
|
9.3 By Spray Inoculation Method |
|
|
46 | (1) |
|
9.4 By Root Dip Inoculation Method |
|
|
47 | (1) |
|
9.5 By Vacuum Infiltration Method |
|
|
47 | (1) |
|
9.6 By Pin Prick Inoculation Method |
|
|
47 | (2) |
| Chapter 10 Isolation and Enumeration of Microorganisms Associated with Bacterial Plant Pathogen from Soil, Rhizosphere, and Phylloplane |
|
49 | (6) |
|
10.1 Isolation of Microorganisms from Cultivated Soil/Soils under Cropping Systems |
|
|
49 | (1) |
|
10.2 Isolation of Rhizosphere Microflora |
|
|
50 | (1) |
|
10.3 Isolation of Microorganism from Root Surface |
|
|
51 | (1) |
|
10.4 Isolation of Microorganisms from Virgin/Uncultivated/Non-Rhizosphere Soil |
|
|
51 | (1) |
|
10.5 Isolation of Phylloplane Microflora by the Serial Dilution Method |
|
|
52 | (1) |
|
10.6 Study of Phylloplane Microflora by Leaf Imprint Method |
|
|
53 | (2) |
| Chapter 11 Preparation of Pure Cultures of Microorganisms |
|
55 | (6) |
|
11.1 By Streak Plate Method |
|
|
55 | (1) |
|
11.2 By Pour Plate Method |
|
|
56 | (2) |
|
11.3 By Spread Plate Technique |
|
|
58 | (3) |
| Chapter 12 Maintenance and Preservation of Bacterial Pure Cultures |
|
61 | (4) |
|
12.1 Preservation on YGCA Media |
|
|
61 | (1) |
|
12.2 Preservation in Refrigerator or Cold Room Storage |
|
|
61 | (1) |
|
12.3 Preservation in Mineral Oil |
|
|
62 | (1) |
|
12.4 Preservation at-40°C in Glycerol |
|
|
62 | (1) |
|
12.5 Preservation in Edible/Nonedible Oils |
|
|
62 | (1) |
|
12.6 Preservation by Liquid Nitrogen Method (Storage at Low Temperature) |
|
|
62 | (1) |
|
12.7 Preservation by Paraffin Method |
|
|
62 | (1) |
|
12.8 Preservation by Freeze-Drying (Lyophilization) Method |
|
|
63 | (2) |
| Chapter 13 Staining of Bacterial Cultures for Morphological Studies |
|
65 | (14) |
|
13.1 Preparation of Bacterial Smears |
|
|
66 | (1) |
|
13.2 Simple or Direct Staining of Bacteria |
|
|
66 | (1) |
|
13.3 Negative Staining of Bacteria |
|
|
66 | (2) |
|
13.4 Gram Staining of Bacteria |
|
|
68 | (1) |
|
13.5 Acid-Fast Staining of Bacteria |
|
|
69 | (1) |
|
13.6 Bacterial Cell Wall Staining |
|
|
70 | (1) |
|
13.7 Cytoplasmic Membrane Staining |
|
|
71 | (1) |
|
13.8 Bacterial Spore (Endospore) Staining |
|
|
71 | (1) |
|
|
|
72 | (2) |
|
|
|
74 | (1) |
|
13.11 Staining of Nuclear Material of Bacteria |
|
|
75 | (1) |
|
13.12 Viability Staining of Bacteria |
|
|
76 | (1) |
|
13.13 Suslow Reaction to Determine Gram-Positive and Gram-Negative Bacteria |
|
|
77 | (2) |
| Chapter 14 Bacterial Mobility |
|
79 | (2) |
|
14.1 Hanging Drop Technique for Demonstrating Motility of Bacteria |
|
|
79 | (1) |
|
|
|
79 | (1) |
|
14.3 Relationship of Virulence with Motility (in Erwinia carotovora var. zeae) |
|
|
80 | (1) |
| Chapter 15 Describing Bacterial Colony Morphology |
|
81 | (2) |
|
|
|
81 | (1) |
|
|
|
81 | (1) |
|
|
|
81 | (1) |
|
15.4 Internal Colony Structure (x 15) |
|
|
82 | (1) |
|
|
|
82 | (1) |
| Chapter 16 Physiological Characterization of Bacteria (Effect of Environmental Conditions on Growth of Bacteria) |
|
83 | (10) |
|
16.1 Effect of Incubation Temperatures on Bacterial Growth |
|
|
83 | (1) |
|
16.2 Determination of Thermal Death Point of Bacteria (TDP) |
|
|
84 | (1) |
|
16.3 Determination of Thermal Death Time of Bacteria |
|
|
85 | (1) |
|
16.4 Effect of pH on the Bacterial Growth |
|
|
86 | (1) |
|
16.5 Effect of Salt Concentration on Bacterial Growth |
|
|
87 | (1) |
|
16.6 Effect of Metals on Bacterial Growth |
|
|
87 | (1) |
|
16.6.1 The Oligodynamic Action of Metals (Aluminum, Copper, and Lead) on Bacteria |
|
|
88 | (1) |
|
16.7 Effect of Dyes on Bacterial Growth |
|
|
88 | (1) |
|
16.8 Effect of Different Wavelengths of Light on Bacterial Growth |
|
|
89 | (1) |
|
16.9 Lethal Effects of Ultraviolet Radiation (UV Rays) on Bacterial Growth |
|
|
90 | (1) |
|
16.10 Effect of Relative Humidity on Bacterial Growth |
|
|
91 | (2) |
| Chapter 17 Biochemical Tests Used in Identification of Bacteria |
|
93 | (16) |
|
17.1 Amylase Production Test (or Demonstration of Starch Hydrolysis) |
|
|
93 | (1) |
|
17.2 Cellulase Production Test (Degradation of Cellulose) |
|
|
94 | (1) |
|
17.3 Production of Pectolytic Enzymes (Degradation of Pectin) |
|
|
95 | (1) |
|
17.4 Hydrolysis of Gelatin, a Protein (Production of Gelatinase) |
|
|
96 | (1) |
|
|
|
96 | (1) |
|
|
|
97 | (2) |
|
17.7 Hydrogen Sulfide Production Test |
|
|
99 | (1) |
|
17.8 Carbohydrate Catabolism by Microorganisms (Oxidation and Fermentation of Glucose) |
|
|
99 | (2) |
|
17.8.1 Grouping of Bacterial Isolates of Xanthomonas malvacearum on the Basis of Lactose Utilization |
|
|
101 | (1) |
|
17.9 Fermentation of Carbohydrates |
|
|
101 | (1) |
|
17.10 Microbial Reaction in Litmus Milk |
|
|
102 | (1) |
|
|
|
103 | (1) |
|
|
|
103 | (1) |
|
|
|
104 | (1) |
|
|
|
104 | (3) |
|
17.14.1 Indole Production Test |
|
|
104 | (1) |
|
17.14.2 Methyl-Red and Voges-Proskauer Tests |
|
|
105 | (1) |
|
17.14.3 Citrate Utilization Test |
|
|
106 | (1) |
|
|
|
107 | (2) |
| Chapter 18 Characterization of Phytopathogenic Bacteria up to Genus |
|
109 | (10) |
|
|
|
109 | (3) |
|
|
|
112 | (1) |
|
|
|
113 | (1) |
|
|
|
113 | (2) |
|
|
|
115 | (1) |
|
|
|
115 | (1) |
|
|
|
116 | (1) |
|
|
|
116 | (1) |
|
18.9 Clavibacter (Corynebacterium) |
|
|
117 | (1) |
|
|
|
117 | (2) |
| Chapter 19 Differentiation of Bacterial Genus into Group |
|
119 | (12) |
|
19.1 Differentiation of Genus Xanthomonas into Groups |
|
|
119 | (1) |
|
19.2 Differentiation of Some Well-Studied Species of the Genus Pseudomonas into Group/Species and Biovars |
|
|
120 | (6) |
|
19.2.1 Characteristics Useful for Differentiation of Various Denitrifying Pseudomonas |
|
|
123 | (1) |
|
19.2.2 Sources and Characteristics of Additional Pseudomonas Species (Isolated from Diseased Plants and Mushrooms) |
|
|
124 | (2) |
|
19.3 Differentiation of Genus Erwinia into Groups |
|
|
126 | (3) |
|
19.3.1 Differentiation of Erwinia Species by Cultural, Physiological, and Biochemical Characteristics |
|
|
127 | (1) |
|
19.3.2 Differentiation of Erwinia Species Based on Acid Production from Organic Compounds |
|
|
128 | (1) |
|
19.3.3 Differentiation of Erwinia Species Based on Utilization of Some Organic Compounds as a Source of Carbon and Energy |
|
|
129 | (1) |
|
19.4 Differentiation of Genus Agrobacterium into Groups and Biovars |
|
|
129 | (2) |
| Chapter 20 Differentiation of Bacterial Group into Species |
|
131 | (4) |
|
20.1 Differentiation of Genus Xanthomonas into Species Based on Morphological and Biochemical Characteristics |
|
|
131 | (1) |
|
20.2 Differentiation of Genus Pseudomonas into Species on the Basis of Biochemical Tests |
|
|
132 | (1) |
|
20.3 Differentiation of Genus Erwinia into Species on the Basis of Biochemical Tests |
|
|
132 | (1) |
|
20.4 Differentiation of Genus Pantoea into Species on the Basis of Biochemical Tests |
|
|
133 | (1) |
|
20.5 Differentiation of Genus Clavibacter (Corynebacterium) into Species on the Basis of Tests |
|
|
133 | (1) |
|
20.6 Differentiation of Agrobacterium tumefaciens into Biotype on the Basis of Different Tests |
|
|
133 | (2) |
| Chapter 21 Identification of Races of Bacterial Plant Pathogen |
|
135 | (8) |
|
21.1 Identification of Races of X. campestris pv. campestris (Xcc) |
|
|
135 | (1) |
|
21.2 Identification of Races of X. axonopodis pv. malvaceraum |
|
|
136 | (1) |
|
21.3 Identification of Races of X. axonopodis pv. viticola |
|
|
137 | (1) |
|
21.4 Identification of Races of X. oryzae pv. oryzae |
|
|
138 | (2) |
|
21.5 Identification of Races of Ralstonia solancearum |
|
|
140 | (3) |
| Chapter 22 Studies on Bacterial Cell Wall-Related Biological Compounds |
|
143 | (8) |
|
22.1 Isolation of Bacterial Cell Wall (Peptidoglycan) |
|
|
143 | (3) |
|
22.1.1 Isolation and Preparation of Bacterial Cell Wall for Compositional Analysis by Ultra Performance Liquid Chromatography (UPLC) |
|
|
144 | (2) |
|
22.2 Isolation of Cell Wall-Less (L-Form) Bacteria |
|
|
146 | (1) |
|
22.3 Isolation of Bacterial Exopolysaccharide (EPS) |
|
|
146 | (2) |
|
22.3.1 Testing of EPS by Iodine Test |
|
|
146 | (1) |
|
|
|
147 | (1) |
|
22.3.3 Estimation of Sugar in EPS |
|
|
147 | (1) |
|
22.3.4 Estimation of Protein in EPS |
|
|
147 | (1) |
|
22.4 Isolation of Bacterial Lipid |
|
|
148 | (1) |
|
22.4.1 Estimation of Bacterial Lipid |
|
|
149 | (1) |
|
22.5 Determination of Glycoprotein Secretion Factor |
|
|
149 | (1) |
|
22.6 Testing of EPS/GP for Induction of WS Reaction |
|
|
150 | (1) |
| Chapter 23 Isolation of Bacterial Metabolites |
|
151 | (14) |
|
23.1 Extraction of Total Cultural Filtrate |
|
|
151 | (1) |
|
23.2 Isolation of Bacterial Toxins |
|
|
151 | (1) |
|
23.2.1 Non-Host-Specific Toxins |
|
|
151 | (1) |
|
|
|
151 | (1) |
|
|
|
152 | (1) |
|
23.3 Isolation of Bacterial Enzymes |
|
|
152 | (6) |
|
23.3.1 Isolation of Cellulases |
|
|
152 | (2) |
|
23.3.1.1 Extraction of Cellulase from Pathogen (In Vitro) |
|
|
152 | (1) |
|
23.3.1.2 Extraction of Cellulase Enzyme from Diseased Plants (In Vivo) |
|
|
153 | (1) |
|
23.3.1.3 Measurement of Endoglucanase |
|
|
153 | (1) |
|
23.3.2 Pectinases or Pectolytic Enzymes of Pathogens |
|
|
154 | (3) |
|
23.3.2.1 Extraction of Pectolytic Enzymes from Diseased Plants (In Vivo) |
|
|
154 | (1) |
|
23.3.2.2 Extraction of Pectolytic Enzymes from a Pathogen (In Vitro) |
|
|
155 | (1) |
|
23.3.2.3 Assaying of Polygalacturonase |
|
|
155 | (1) |
|
23.3.2.4 Assaying of Pectin Transliminases (PTE, PATE) |
|
|
156 | (1) |
|
23.3.3 Assaying Pectolytic Activity of Erwinia carotovora |
|
|
157 | (1) |
|
23.3.4 Determination of Pectic Enzyme Production by Xanthomonas malvacearum |
|
|
157 | (1) |
|
23.4 Isolation of Bacteriocin |
|
|
158 | (2) |
|
23.4.1 Bacteriocin Production |
|
|
158 | (1) |
|
23.4.2 Chemical and Physical Stability of Bacteriocin |
|
|
159 | (1) |
|
23.4.3 Induction of Bacteriocin Production by Mitomycin C |
|
|
160 | (1) |
|
23.4.4 Detection of Antimicrobial Activity in Bacteriocin |
|
|
160 | (1) |
|
23.5 Isolation of Siderophore |
|
|
160 | (5) |
|
23.5.1 Siderophore Detection Assay |
|
|
161 | (1) |
|
23.5.2 Effect of Iron Concentration, Sugars, Organic and Amino Acids, and Nitrogen on Siderophores Production |
|
|
162 | (1) |
|
23.5.3 Characterization of Siderophores |
|
|
163 | (2) |
| Chapter 24 Role of Bacterial Component in Induction of Disease Reaction or Pathogenesis |
|
165 | (4) |
|
24.1 EPS in Induction of Disease Reaction |
|
|
165 | (1) |
|
24.2 Bacterial Enzymes in Induction of Disease Reaction |
|
|
166 | (1) |
|
24.2.1 Studies with Pectolytic Enzymes of Erwinia |
|
|
166 | (1) |
|
24.3 Bacterial Toxins in Induction of Disease Reaction |
|
|
167 | (2) |
|
24.3.1 Studies with Phaseolotoxin of Pseudomonas |
|
|
167 | (2) |
| Chapter 25 Enumeration of Bacterial Population |
|
169 | (4) |
|
25.1 Enumeration (Counting) of Bacteria by Plate Count or Serial Dilution Agar Plate Technique |
|
|
169 | (1) |
|
25.2 Counting of Bacterial Population by the Use of Spectrophotometer |
|
|
170 | (3) |
| Chapter 26 Determination of Ice-Nucleation in Plant Pathogenic Bacteria |
|
173 | (2) |
|
26.1 Assessment of Ice Nucleation Property of Pseudomonas syringae |
|
|
173 | (2) |
| Chapter 27 Transmission of Plant Pathogenic Bacteria through Vector |
|
175 | (6) |
|
27.1 Transmission of Bacteria (Xanthomonas) through Lepidopteron Larvae (Spotted Bollworms) |
|
|
175 | (1) |
|
27.2 Transmission of Bacteria (Xanthomonas) through Insect/Beetle (Red Cotton Bug) |
|
|
176 | (1) |
|
27.3 Transmission of Erwinia amylovora through Bees |
|
|
176 | (1) |
|
27.4 Transmission of Erwinia through Spotted Beetles |
|
|
177 | (1) |
|
27.5 Transmission of Erwinia through Nematodes |
|
|
178 | (3) |
| Chapter 28 Determination of Perpetuation of Bacterial Plant Pathogen |
|
181 | (4) |
|
|
|
181 | (1) |
|
28.2 In Planting Material |
|
|
181 | (1) |
|
|
|
182 | (1) |
|
|
|
183 | (1) |
|
|
|
184 | (1) |
| Chapter 29 Determination of Plant Resistance |
|
185 | (4) |
|
29.1 Determination of Vertical Resistance |
|
|
185 | (1) |
|
29.2 Determination of Horizontal Resistance |
|
|
185 | (1) |
|
29.3 Determination of Horizontal Resistance by Using Single Race |
|
|
186 | (3) |
| Chapter 30 Identification of Bacteria by Using the Immunodiagnostic Technique |
|
189 | (20) |
|
30.1 Preparation of Bacterial Antigens or Antigen Glycoprotein from BacteriaPathogens |
|
|
193 | (1) |
|
30.2 Immunization and Preparation of Antibodies |
|
|
193 | (4) |
|
30.2.1 Effect of Immunization Period on Recovery of Immunoglobulin |
|
|
193 | (1) |
|
30.2.2 Effect of Extraction Method on Recovery and Affinity of Immunoglobulin |
|
|
194 | (2) |
|
30.2.3 Estimation of Effective Immunoglobulin |
|
|
196 | (1) |
|
30.2.4 Estimation of Affinity of Immunoglobulin |
|
|
196 | (1) |
|
30.3 Production and Characterization of Monoclonal and Polyclonal Antibodies (Evaluation of Specificity) |
|
|
197 | (1) |
|
30.3.1 Validity of pAb-Xcc in Detection of the Pathogens in Seed Samples and Infected Plant Materials |
|
|
197 | (1) |
|
30.4 Immunodiagnostic Techniques (Antigen-Antibodies Reaction) |
|
|
198 | (9) |
|
30.4.1 Precipitation Test |
|
|
198 | (1) |
|
30.4.2 Gel Diffusion Test |
|
|
199 | (1) |
|
30.4.3 Agglutination Test |
|
|
199 | (1) |
|
30.4.4 Immunological Test with Markers |
|
|
200 | (1) |
|
30.4.5 Immunological Electron Microscopy |
|
|
200 | (1) |
|
30.4.6 Enzyme Linked Immunosorbent Assay (ELISA) |
|
|
200 | (3) |
|
30.4.7 Detection of Xanthomonas campestris pv. campestris through ELISA |
|
|
203 | (4) |
|
30.4.8 Determination of the Antigenic Determinant in Bacterial Pathogen by Immunoblot Assay |
|
|
207 | (1) |
|
30.5 Use of Specific Immunoglobulin under Immunofluorescence to Detect the Latent Infection |
|
|
207 | (2) |
| Chapter 31 Identification of Bacteria by Using Molecular Techniques |
|
209 | (36) |
|
31.1 Isolation of Bacterial DNA |
|
|
209 | (4) |
|
31.1.1 Isolation of Bacterial Genomic DNA |
|
|
209 | (1) |
|
31.1.2 Isolation of Bacterial Plasmid DNA |
|
|
210 | (3) |
|
31.2 Plasmid Profiling Based Techniques |
|
|
213 | (3) |
|
31.2.1 Plasmid DNA Restriction Analysis |
|
|
213 | (2) |
|
|
|
215 | (1) |
|
31.3 Hybridization-Based Techniques |
|
|
216 | (8) |
|
31.3.1 Southern Blotting Technique |
|
|
216 | (2) |
|
31.3.2 Western Blotting Technique |
|
|
218 | (3) |
|
31.3.3 Fluorescent In Situ Hybridization (FISH) |
|
|
221 | (2) |
|
31.3.4 Microarray Technology |
|
|
223 | (1) |
|
|
|
224 | (11) |
|
|
|
224 | (2) |
|
31.4.2 Primer Identification/Designing |
|
|
226 | (1) |
|
31.4.3 Arbitrary/Random Primers Based PCR Methods |
|
|
226 | (4) |
|
31.4.3.1 Randomly Amplified Polymorphic DNA Markers (RAPD) |
|
|
226 | (3) |
|
31.4.3.2 Inter Simple Sequence Repeats Markers (ISSR) |
|
|
229 | (1) |
|
31.4.4 Sequence Specific Primers Based PCR Methods |
|
|
230 | (2) |
|
31.4.4.1 Simple Sequence Repeats (SSR) or Microsatellite Markers |
|
|
230 | (2) |
|
31.4.4.2 Single Nucleotide Polymorphism (SNP) |
|
|
232 | (1) |
|
31.4.5 Modified PCR Methods |
|
|
232 | (3) |
|
|
|
232 | (1) |
|
|
|
232 | (1) |
|
|
|
233 | (1) |
|
31.4.5.4 Reverse Transcription-PCR (RT-PCR) |
|
|
233 | (1) |
|
31.4.5.5 Quantitative Real-Time Reverse Transcription-PCR (RT-PCR) |
|
|
233 | (1) |
|
31.4.5.6 Loop Mediated Isothermal Amplification (LAMP) |
|
|
234 | (1) |
|
31.4.5.7 Cooperational PCR |
|
|
234 | (1) |
|
31.4.5.8 Eric and Box PCR Amplification |
|
|
234 | (1) |
|
31.5 Hybridization-PCR Combination-Based Techniques |
|
|
235 | (2) |
|
31.5.1 Amplified Fragment Length Polymorphism Markers (AFLP) |
|
|
235 | (2) |
|
31.6 rRNA/DNA Based Techniques |
|
|
237 | (2) |
|
31.6.1 Ribotyping or Ribosomal DNA Restriction Analysis |
|
|
237 | (1) |
|
31.6.2 16S rRNA Sequencing |
|
|
238 | (1) |
|
31.6.3 Internal Transcribed Spacer (ITS) rRNA Sequencing |
|
|
239 | (1) |
|
31.7 Terminal Restriction Fragment Pattern (TRFP) Method |
|
|
239 | (1) |
|
31.8 Pulse Field Gel Electrophoresis Technique (PFGE) |
|
|
240 | (1) |
|
31.9 Guanine-Plus-Cytosine-Based Analysis |
|
|
241 | (1) |
|
31.10 Flow Cytometry for Bacterial Diagnosis |
|
|
242 | (1) |
|
31.11 Deoxyribonucleic Acid Content of Bacterium, Its Relation to Virulence and Drug Resistance |
|
|
243 | (2) |
| Chapter 32 Bacteriophages of Plant Pathogenic Bacteria |
|
245 | (6) |
|
32.1 Isolation of Lytic Phages |
|
|
245 | (1) |
|
|
|
245 | (2) |
|
32.1.2 Indirect Method or Enrichment Method |
|
|
246 | (1) |
|
32.1.3 Detection of Phage |
|
|
246 | (1) |
|
32.1.4 Characterization of Phage |
|
|
246 | (1) |
|
32.2 Bacterial Phage Typing |
|
|
247 | (1) |
|
32.3 Determination of Phage Titer |
|
|
248 | (1) |
|
32.4 Isolation of Lysogenic Phages |
|
|
248 | (1) |
|
32.5 Preservation of Bacteriophages |
|
|
249 | (2) |
| Chapter 33 Determination of Bacterial Sensitivity to Antibiotics and Pesticide |
|
251 | (6) |
|
33.1 Determination of Bacterial Sensitivity by Poison Food Technique |
|
|
251 | (1) |
|
33.2 Determination of Bacterial Sensitivity by Disc Assay Method |
|
|
251 | (2) |
|
33.3 Determination of Minimal Inhibitory Concentration (MIC) of Antibiotics/Pesticides |
|
|
253 | (1) |
|
33.4 Isolation of Antibiotics/Pesticide Resistant Mutant of Bacteria |
|
|
253 | (1) |
|
33.5 Studies on Pesticide Cross Resistance in Bacteria |
|
|
253 | (2) |
|
33.6 Studies on Multidrug Resistance in Bacteria |
|
|
255 | (1) |
|
33.7 Studies on Pathogenicity of Multidrug Resistance Bacteria |
|
|
255 | (1) |
|
33.8 Curing of Bacterial Mutant from Antibiotic Resistance |
|
|
256 | (1) |
|
33.9 Curing of Plasmid Borne Antibiotic Resistance |
|
|
256 | (1) |
| Chapter 34 Determination of Mutation in Bacterial Plant Pathogen |
|
257 | (4) |
|
34.1 Isolation of Antibiotic Resistant Mutant by Gradient Plate Technique |
|
|
257 | (1) |
|
34.2 Isolation of Avirulent Mutants (Mutation for Pathogenicity Character) |
|
|
258 | (1) |
|
34.3 Isolation of Albino Mutant (Mutation for Pigmentation) |
|
|
259 | (1) |
|
34.4 Differentiation of Virulent and Avirulent Mutant |
|
|
260 | (1) |
| Chapter 35 Transfer of Genetic Factor in Plant Pathogenic Bacteria |
|
261 | (4) |
|
35.1 Transfer of Genetic Material through Transformation |
|
|
261 | (1) |
|
35.2 Transfer of Genetic Material through Conjugation |
|
|
262 | (1) |
|
35.3 Transfer of Genetic Material through Transduction |
|
|
263 | (2) |
| Chapter 36 Population Studies of Plant Pathogenic Bacteria on/in Host Plant |
|
265 | (4) |
|
36.1 Estimation of Bacterial Population by Leaf Wash Method |
|
|
265 | (1) |
|
36.2 Estimation of Epiphytic Population by Leaf Impression Method |
|
|
265 | (1) |
|
36.3 Estimation of Endophytic Population by Serial Dilution Method |
|
|
266 | (1) |
|
36.4 Dynamics of Bacterial Population in Host Plant |
|
|
266 | (1) |
|
36.5 Isolation of Intercellular Fluid to Study Bacterial Growth |
|
|
267 | (2) |
| Chapter 37 Preservation of Bacterial Disease Samples |
|
269 | (2) |
|
37.1 Dry Preservation of Samples |
|
|
269 | (1) |
|
37.2 Microwave Drying Method |
|
|
269 | (1) |
|
37.3 Preservation of Samples in Preservation Solutions |
|
|
269 | (1) |
|
37.4 Preservation of Leaf Spot/Blight Samples by Lamination |
|
|
270 | (1) |
|
37.5 Preservation of Fruit Samples by Wax Treatment |
|
|
270 | (1) |
| Chapter 38 Measurement of Plant Bacterial Disease |
|
271 | (14) |
|
38.1 Glossary to Describe Symptoms |
|
|
271 | (4) |
|
38.2 Measurement of Leaf Spot/Blight Disease |
|
|
275 | (3) |
|
38.3 Measurement of Wilt Disease |
|
|
278 | (7) |
| Chapter 39 Isolation of Antibacterial Compound |
|
285 | (8) |
|
39.1 Preliminary Assessment Technique to Determine Presence of Antibacterial Compound in Plant by Computing Bacterial Population |
|
|
285 | (1) |
|
39.2 Assessment of Antibacterial Properties of Plant |
|
|
286 | (1) |
|
39.3 Efficacy of Aqueous Extract of Medicinal Plant against Plant Pathogenic Bacteria (Xanthomonas spp.) |
|
|
287 | (1) |
|
39.4 Preparation of Plants Extract in Solvents |
|
|
287 | (1) |
|
39.5 Assessment and Quantification of Equivalent Antibacterial Compound in Solvent Plant Extract |
|
|
287 | (1) |
|
39.6 Isolation of Antibacterial Compound from Plant Source |
|
|
288 | (1) |
|
39.7 Isolation of Antibacterial Compound from Microbial Source |
|
|
289 | (1) |
|
39.8 Testing Efficacy of Antibacterial Molecule |
|
|
289 | (1) |
|
39.9 Identification of Antibacterial Molecule |
|
|
290 | (3) |
| Chapter 40 Isolation of Antibacterial Microbes |
|
293 | (4) |
|
40.1 Isolation of Antibacterial Fungi |
|
|
293 | (1) |
|
40.2 Isolation of Antibacterial Bacteria |
|
|
293 | (1) |
|
40.3 Testing Antibacterial Property of Microbial Culture |
|
|
294 | (1) |
|
40.4 Mass Production of Antibacterial Culture |
|
|
295 | (2) |
|
40.4.1 Carrier-Based Mass Production |
|
|
295 | (1) |
|
40.4.2 Liquid-Based Mass Production |
|
|
295 | (2) |
| Chapter 41 Preparation of Bactericidal Formulations |
|
297 | (2) |
|
41.1 Preparation of Bactericidal Spray |
|
|
297 | (1) |
|
41.1.1 Preparation of Bordeaux Mixture |
|
|
297 | (1) |
|
41.1.2 Preparation of Bactericidal Mixture |
|
|
297 | (1) |
|
41.2 Preparation of Bactericidal Pastes |
|
|
298 | (1) |
|
41.2.1 Preparation of Bordeaux Paste |
|
|
298 | (1) |
|
41.2.2 Preparation of Rahuri Paste |
|
|
298 | (1) |
| Bibliography |
|
299 | (6) |
| Appendix |
|
305 | (8) |
| Index |
|
313 | |