| Preface |
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| About the Authors |
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xi | |
| Chapter I An Overview of Geminivirus Epidemics |
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1 | (22) |
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1 | (1) |
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1 | (13) |
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5 | (1) |
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1.2 Classification of Geminivirus |
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6 | (8) |
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14 | (1) |
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14 | (9) |
| Chapter II Infection Cycle and Transmission of Begomovirus |
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23 | (12) |
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23 | (1) |
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23 | (6) |
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2.1 Begomoviruses Associated with Crop Plants |
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27 | (1) |
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2.2 Recombination: The Engine for Geminiviral Evolution |
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28 | (1) |
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29 | (1) |
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29 | (6) |
| Chapter III Begomovirus Associated with Alternative Host Weeds: International and National Status |
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35 | (24) |
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35 | (1) |
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35 | (13) |
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3.1 International Status of Begomovirus Associated Weeds |
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36 | (4) |
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3.2 Computational Biology for the analysis of Begomovirus Components |
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40 | (1) |
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3.3 Recombination: The Engine for Begomoviral Evolution |
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41 | (1) |
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3.4 Current Status of Begomovirus Associated Weeds in India |
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41 | (7) |
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48 | (1) |
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48 | (11) |
| Chapter IV Current Status of Geminivirus in India: RNAi Technology |
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59 | (24) |
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59 | (1) |
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4 Introduction to Crop Production in India |
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60 | (18) |
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4.1 Geminiviridae Family and Its Transmission Vectors |
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60 | (4) |
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4.2 Current Research on Geminiviruses |
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64 | (6) |
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4.3 Diversity among Indian Geminivirus |
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70 | (6) |
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4.4 RNAi Technology: Ray of Hope |
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76 | (2) |
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78 | (1) |
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78 | (5) |
| Chapter V Begomovirus Infecting Weeds of North India: Molecular Analysis |
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83 | (18) |
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83 | (1) |
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84 | (14) |
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5.1 Survey and Occurrence of Begomovirus Infected Weeds in Northern India |
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84 | (3) |
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87 | (1) |
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5.3 Polymerase Chain Reaction (PCR) |
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87 | (2) |
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89 | (2) |
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5.5 Core subset of NCBI submitted Sequences |
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91 | (7) |
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98 | (1) |
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98 | (3) |
| Chapter VI Phylogenetic Characterization of Begomovirus Infecting Weeds of North India |
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101 | (24) |
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101 | (1) |
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101 | (19) |
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6.1 Phylogenetic Analysis |
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102 | (18) |
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120 | (1) |
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121 | (4) |
| Chapter VII Homology Modeling, Ligand and Protein Function Prediction of Begomovirus Components |
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125 | (26) |
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125 | (1) |
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126 | (20) |
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7.1 Characterization of Verbesina Encelioides Leaf Curl Alphasatellite [ HQ631431] |
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126 | (6) |
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7.2 Characterization of Croton Yellow Vein Mosaic Betasatellite [ HQ631430] |
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132 | (4) |
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7.3 In Silico characterization of Coat proteins of Begomovirus Isolates |
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136 | (10) |
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146 | (2) |
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148 | (3) |
| Chapter VIII Protein Docking |
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151 | (8) |
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151 | (1) |
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152 | (5) |
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8.1 Docking of Coat and AC4 protein with β-lactoglobulin [ 2Q2M] |
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153 | (4) |
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157 | (1) |
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157 | (2) |
| Chapter IX Geminivirus Host Mobility (In Silico Recombination Analysis) |
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159 | (36) |
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159 | (1) |
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159 | (30) |
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9.1 Variability of Begomovirus Species |
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161 | (1) |
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9.2 In Silico Recombination Analysis |
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162 | (1) |
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9.3 Natural Virus Recombinants |
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162 | (2) |
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9.4 In Silico Recombination Analysis of Croton Yellow Vein Mosaic Betasatellite (HQ631430) |
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164 | (5) |
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9.5 In Silico Recombination Analysis of Mimosa Yellow Vein Virus (HQ876467) |
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169 | (4) |
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9.6 In Silico Recombination Analysis of Verbesina Encelioides Leaf Curl Alphasatellite (HQ631431) |
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173 | (5) |
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9.7 In Silico Recombination Analysis of Datura Leaf Curl Virus (JN000702) |
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178 | (2) |
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9.8 In Silico Recombination Analysis of Sonchus Yellow Mosaic Virus (JN000703) |
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180 | (2) |
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9.9 In Silico Recombination Analysis of Croton Yellow Vein Mosaic Hisar Virus (JN000701) |
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182 | (1) |
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9.10 In Silico Recombination Analysis of Croton Yellow Vein Mosaic Virus AC1-Like Gene (HQ631429) |
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183 | (3) |
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9.11 In Silico Recombination Analysis of Calotropis Yellow Vein Mosiac Virus (JF968444) |
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186 | (1) |
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9.12 Conclusion for the Recombination Analysis |
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187 | (2) |
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189 | (1) |
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189 | (6) |
| Chapter X The Geminivirus Database (GVDB) |
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195 | (10) |
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195 | (1) |
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195 | (6) |
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10.1 Module in Silico Biology |
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199 | (1) |
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10.2 Module Research on Geminivirus |
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199 | (1) |
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10.3 Module Publication List |
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200 | (1) |
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201 | (1) |
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201 | (4) |
| Index |
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205 | |
