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E-raamat: Weeds as an Alternate Host of Geminivirus

  • Formaat: 224 pages
  • Ilmumisaeg: 01-Nov-2013
  • Kirjastus: Nova Science Publishers Inc
  • ISBN-13: 9781629484310
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  • Formaat: 224 pages
  • Ilmumisaeg: 01-Nov-2013
  • Kirjastus: Nova Science Publishers Inc
  • ISBN-13: 9781629484310
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The book represents basic information about viral-caused and viral-like diseases in many weeds. Many scientific reports have demonstrated that weeds serve as a reservoir or alternative hosts for geminivirus genera (e.g., Begomovirus) for survival and spread in the absence of main crops. This book represents a tip of the iceberg of the diversity of begomoviruses in weeds. The recognition that geminivirus strains are capable of rapidly diverging through multiple mechanisms, underscores the need for accurate molecularly based methods that permit detection and tracking of biologically significant variants. Molecular approaches must combine knowledge of biology, ecology and the ability to monitor both conserved sequences and specific sites, most likely to undergo alteration with phylogenetic predictions to facilitate accurate identification and tracking of begomovirus variants and to also recognize new or resurgent viruses. Establishing databases of baseline sequences for extant viruses will permit future comparisons in establishing and interpreting disease patterns and associated trends for vector populations. With the development of reliable computational recombination detection tools and an increasing number of available genome sequences, many studies have reported evidence of recombination in a wide range of virus genera. The book also focuses on the first geminivirus database (GVDB) that contains biotic, molecular and in silico information which will permit rapid and accurate begomovirus identification and the selection of relevant viral species for the development of disease resistance/management strategy to the geminiviruses specific to individual crop production areas. To close, there is one chapter on the international and national status of geminivirus infection in various host weeds. Furthermore, the book's heart discusses the most recent cutting-edge of research that makes this book essential reading for everyone, from researchers to scholars to students, working with molecular and computational aspects of geminivirus research as well as scientists already familiar with the area.
Preface ix
About the Authors xi
Chapter I An Overview of Geminivirus Epidemics 1(22)
Abstract
1(1)
1 Introduction
1(13)
1.1 Geminiviridae
5(1)
1.2 Classification of Geminivirus
6(8)
Conclusion
14(1)
References
14(9)
Chapter II Infection Cycle and Transmission of Begomovirus 23(12)
Abstract
23(1)
2 Introduction
23(6)
2.1 Begomoviruses Associated with Crop Plants
27(1)
2.2 Recombination: The Engine for Geminiviral Evolution
28(1)
Conclusion
29(1)
References
29(6)
Chapter III Begomovirus Associated with Alternative Host Weeds: International and National Status 35(24)
Abstract
35(1)
3 Introduction
35(13)
3.1 International Status of Begomovirus Associated Weeds
36(4)
3.2 Computational Biology for the analysis of Begomovirus Components
40(1)
3.3 Recombination: The Engine for Begomoviral Evolution
41(1)
3.4 Current Status of Begomovirus Associated Weeds in India
41(7)
Conclusion
48(1)
References
48(11)
Chapter IV Current Status of Geminivirus in India: RNAi Technology 59(24)
Abstract
59(1)
4 Introduction to Crop Production in India
60(18)
4.1 Geminiviridae Family and Its Transmission Vectors
60(4)
4.2 Current Research on Geminiviruses
64(6)
4.3 Diversity among Indian Geminivirus
70(6)
4.4 RNAi Technology: Ray of Hope
76(2)
Conclusion
78(1)
References
78(5)
Chapter V Begomovirus Infecting Weeds of North India: Molecular Analysis 83(18)
Abstract
83(1)
5 Introduction
84(14)
5.1 Survey and Occurrence of Begomovirus Infected Weeds in Northern India
84(3)
5.2 Infectivity Assay
87(1)
5.3 Polymerase Chain Reaction (PCR)
87(2)
5.4 RCA Multi Digest
89(2)
5.5 Core subset of NCBI submitted Sequences
91(7)
Conclusion
98(1)
References
98(3)
Chapter VI Phylogenetic Characterization of Begomovirus Infecting Weeds of North India 101(24)
Abstract
101(1)
6 Introduction
101(19)
6.1 Phylogenetic Analysis
102(18)
Conclusion
120(1)
References
121(4)
Chapter VII Homology Modeling, Ligand and Protein Function Prediction of Begomovirus Components 125(26)
Abstract
125(1)
7 Introduction
126(20)
7.1 Characterization of Verbesina Encelioides Leaf Curl Alphasatellite [ HQ631431]
126(6)
7.2 Characterization of Croton Yellow Vein Mosaic Betasatellite [ HQ631430]
132(4)
7.3 In Silico characterization of Coat proteins of Begomovirus Isolates
136(10)
Conclusion
146(2)
References
148(3)
Chapter VIII Protein Docking 151(8)
Abstract
151(1)
8 Introduction
152(5)
8.1 Docking of Coat and AC4 protein with β-lactoglobulin [ 2Q2M]
153(4)
Conclusion
157(1)
References
157(2)
Chapter IX Geminivirus Host Mobility (In Silico Recombination Analysis) 159(36)
Abstract
159(1)
9 Introduction
159(30)
9.1 Variability of Begomovirus Species
161(1)
9.2 In Silico Recombination Analysis
162(1)
9.3 Natural Virus Recombinants
162(2)
9.4 In Silico Recombination Analysis of Croton Yellow Vein Mosaic Betasatellite (HQ631430)
164(5)
9.5 In Silico Recombination Analysis of Mimosa Yellow Vein Virus (HQ876467)
169(4)
9.6 In Silico Recombination Analysis of Verbesina Encelioides Leaf Curl Alphasatellite (HQ631431)
173(5)
9.7 In Silico Recombination Analysis of Datura Leaf Curl Virus (JN000702)
178(2)
9.8 In Silico Recombination Analysis of Sonchus Yellow Mosaic Virus (JN000703)
180(2)
9.9 In Silico Recombination Analysis of Croton Yellow Vein Mosaic Hisar Virus (JN000701)
182(1)
9.10 In Silico Recombination Analysis of Croton Yellow Vein Mosaic Virus AC1-Like Gene (HQ631429)
183(3)
9.11 In Silico Recombination Analysis of Calotropis Yellow Vein Mosiac Virus (JF968444)
186(1)
9.12 Conclusion for the Recombination Analysis
187(2)
Conclusion
189(1)
References
189(6)
Chapter X The Geminivirus Database (GVDB) 195(10)
Abstract
195(1)
10 Introduction
195(6)
10.1 Module in Silico Biology
199(1)
10.2 Module Research on Geminivirus
199(1)
10.3 Module Publication List
200(1)
Conclusion
201(1)
References
201(4)
Index 205