Preface |
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viii | |
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Setting the stage: why ab initio molecular dynamics? |
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1 | (8) |
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9 | (166) |
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Getting started: unifying MD and electronic structure |
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11 | (74) |
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Deriving classical molecular dynamics |
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11 | (11) |
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Ehrenfest molecular dynamics |
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22 | (2) |
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Born-Oppenheimer molecular dynamics |
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24 | (3) |
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Car-Parrinello molecular dynamics |
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27 | (24) |
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What about Hellmann-Feynman forces? |
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51 | (5) |
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56 | (11) |
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Electronic structure methods |
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67 | (8) |
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75 | (10) |
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Implementation: using the plane wave basis set |
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85 | (51) |
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Introduction and basic definitions |
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85 | (8) |
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93 | (6) |
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Exchange and correlation energy |
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99 | (5) |
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Total energy, gradients, and stress tensor |
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104 | (5) |
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Energy and force calculations in practice |
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109 | (2) |
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Optimizing the Kohn-Sham orbitals |
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111 | (8) |
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119 | (9) |
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Program organization and layout |
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128 | (8) |
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Atoms with plane waves: accurate pseudopotentials |
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136 | (39) |
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137 | (1) |
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Norm-conserving pseudopotentials |
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138 | (14) |
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Pseudopotentials in the plane wave basis |
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152 | (5) |
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Dual-space Gaussian pseudopotentials |
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157 | (3) |
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Nonlinear core correction |
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160 | (2) |
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Pseudopotential transferability |
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162 | (5) |
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Example: pseudopotentials for carbon |
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167 | (8) |
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Part II Advanced techniques |
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175 | (194) |
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Beyond standard ab initio molecular dynamics |
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177 | (109) |
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177 | (1) |
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Beyond microcanonics: thermostats, barostats, metadynamics |
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178 | (16) |
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Beyond ground states: Roks, surface hopping, FEMD, TDDFT |
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194 | (39) |
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Beyond classical nuclei: path integrals and quantum corrections |
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233 | (34) |
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Hybrid QM/MM molecular dynamics |
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267 | (19) |
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Beyond norm-conserving pseudopotentials |
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286 | (23) |
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286 | (1) |
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287 | (3) |
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290 | (2) |
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Ultrasoft pseudopotentials |
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292 | (4) |
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296 | (1) |
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Integrating the Car-Parrinello equations |
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297 | (12) |
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309 | (41) |
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Perturbation theory: Hessian, polarizability, NMR |
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309 | (18) |
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Wannier functions: dipole moments, IR spectra, atomic charges |
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327 | (23) |
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350 | (19) |
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350 | (2) |
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352 | (2) |
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354 | (5) |
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Massively parallel processing |
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359 | (10) |
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369 | (50) |
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From materials to biomolecules |
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371 | (36) |
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371 | (1) |
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Solids, minerals, materials, and polymers |
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372 | (4) |
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376 | (4) |
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Mechanochemistry and molecular electronics |
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380 | (2) |
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Water and aqueous solutions |
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382 | (3) |
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Non-aqueous liquids and solutions |
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385 | (4) |
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Glasses and amorphous systems |
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389 | (1) |
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Matter at extreme conditions |
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390 | (2) |
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Clusters, fullerenes, and nanotubes |
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392 | (2) |
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Complex and fluxional molecules |
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394 | (2) |
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Chemical reactions and transformations |
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396 | (3) |
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Homogeneous catalysis and zeolites |
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399 | (1) |
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Photophysics and photochemistry |
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400 | (3) |
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Biophysics and biochemistry |
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403 | (4) |
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Properties from ab initio simulations |
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407 | (9) |
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407 | (1) |
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Electronic structure analyses |
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407 | (3) |
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410 | (1) |
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Magnetism, NMR and EPR spectroscopy |
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411 | (1) |
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Electronic spectroscopy and redox properties |
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412 | (1) |
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X-ray diffraction and Compton scattering |
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413 | (1) |
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414 | (2) |
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416 | (3) |
Bibliography |
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419 | (131) |
Index |
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550 | |