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E-raamat: Benign and Pathological Chromosomal Imbalances: Microscopic and Submicroscopic Copy Number Variations (CNVs) in Genetics and Counseling

(Professor, Friedrich-Schiller University of Jena, Germany)
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  • Ilmumisaeg: 31-Aug-2013
  • Kirjastus: Academic Press Inc
  • Keel: eng
  • ISBN-13: 9780124046849
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  • Formaat: PDF+DRM
  • Ilmumisaeg: 31-Aug-2013
  • Kirjastus: Academic Press Inc
  • Keel: eng
  • ISBN-13: 9780124046849
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Liehr (molecular cytogenetics, Friedrich Schiller U., Jena, Germany) surveys the current knowledge of variation in the human genome, including the increasing number of alterations that seem to have no phenotypic consequences--a phenomenon once thought rare if not impossible. Focusing on cytogenetically visible copy number variants (CG-CNVs), he considers what the norm is, inheritance, formation, types, and their role on genetic diagnostics and counseling. Annotation ©2013 Book News, Inc., Portland, OR (booknews.com)

Given technology-driven FISH, aCGH approaches have yet to reach the much-touted promise of universal coverage or cost efficacy to sample investigated, deep chromosome analysis and molecular cytogenetics will remain relevant for technology translation, study design and therapeutic assessment for many years.

This book provides a classification system to clarify the disease implications of cytogenetically visible copy number variants using cytogenetic assessment of heterochromatic or euchromatic DNA variants. While variants of several megabasepair can be present in the human genome without clinical consequence, how to visually circumvent these benign areas and provide laser-focused assessment of disease implications is not always appreciated by practitioners used only to highly costly molecular profiling methods (FISH / aCGH / NGS). Knowledge of the rare but recurrent rearrangements unfamiliar to practitioners saves time and money for molecular cytogeneticists and genetics counselors in helping to distinguish benign from harmful CG-CNV. It also supports them in further assessment of which molecular cytogenetics tools to deploy.

  • Detailed discussion of how to define the inheritance and formation of cytogenetically visible copy number variations using cytogenetic and molecular approaches for genetic diagnostics, patient counseling and treatment plan development
  • Uniquely classifies all known variants by chromosomal origin, cutting time and money for researchers in reviewing benign and pathologic variants before costly molecular methods are used to investigate
  • Side-by-side comparison of copy number variants with their recently identified submicroscopic form, aiding technology assessment using aCGH and other techniques


Benign & Pathological Chromosomal Imbalances systematically clarifies the disease implications of cytogenetically visible copy number variants (CG-CNV) using cytogenetic assessment of heterochromatic or euchromatic DNA variants. While variants of several megabasepair can be present in the human genome without clinical consequence, visually distinguishing these benign areas from disease implications does not always occur to practitioners accustomed to costly molecular profiling methods such as FISH, aCGH, and NGS.

As technology-driven approaches like FISH and aCGH have yet to achieve the promise of universal coverage or cost efficacy to sample investigated, deep chromosome analysis and molecular cytogenetics remains relevant for technology translation, study design, and therapeutic assessment.

Knowledge of the rare but recurrent rearrangements unfamiliar to practitioners saves time and money for molecular cytogeneticists and genetics counselors, helping to distinguish benign from harmful CG-CNV. It also supports them in deciding which molecular cytogenetics tools to deploy.

  • Shows how to define the inheritance and formation of cytogenetically visible copy number variations using cytogenetic and molecular approaches for genetic diagnostics, patient counseling, and treatment plan development
  • Uniquely classifies all known variants by chromosomal origin, saving time and money for researchers in reviewing benign and pathologic variants before costly molecular methods are used to investigate
  • Side-by-side comparison of copy number variants with their recently identified submicroscopic form, aiding technology assessment using aCGH and other techniques

Arvustused

"This volume systematically clarifies the disease implications of cytogenetically visible copy number variants (CG-CNV) using cytogenetic assessment of heterochromatic or euchromatic DNA variantsdeep chromosome analysis and molecular cytogenetics remains relevant for technology translation, study design, and therapeutic assessment." --Anticancer Research 34, 2014

"Liehrsurveys the current knowledge of variation in the human genome, including the increasing number of alterations that seem to have no phenotypic consequences a phenomenon once thought rare if not impossible. Focusing on cytogenetically visible copy number variants (CG-CNVs), he considers what the norm is, inheritance, formation, types, and their role on genetic diagnostics and counseling." --Reference & Research Book News, December 2013

Muu info

Useful 'how-to' handbook for clinical geneticists and molecular cytogeneticists to identify copy number variants with benign and pathologic consequences, providing an inexpensive jumping-off point for targeted technology-driven investigation
Biography xiii
Abbreviations xv
Foreword xvii
Acknowledgments xix
1 Introduction
1(12)
1.1 The Problem
3(4)
1.1.1 Definition of CG-CNVs versus MG-CNVs
4(1)
1.1.2 CG-CNVs without Clinical Consequences
5(1)
1.1.2.1 Heterochromatic CG-CNVs
5(1)
1.1.2.2 Euchromatic CG-CNVs
5(2)
1.2 Frequency and Chromosomal Origin of Cytogenetically Visible Copy Number Variants (CG-CNVs) without Clinical Consequences
7(1)
1.3 Practical Meaning of CG-CNVs in Diagnostics and Research
8(2)
1.3.1 Multiple CG-CNVs
8(2)
1.4 Submicroscopic CNVs (MG-CNVs)
10(3)
2 CG-CNVs: What is the Norm?
13(12)
2.1 Acrocentric Chromosomes' Short Arm Variants
13(1)
2.2 Variants of the Centromeric Regions
14(4)
2.3 Variants of Noncentromeric Heterochromatin
18(1)
2.4 Unbalanced Chromosome Abnormalities (UBCAs) without Clinical Consequences
18(3)
2.5 Small Supernumerary Marker Chromosomes (sSMCs)
21(1)
2.6 Euchromatic Variants (EVs)
21(2)
2.7 Gonosomal Derived Chromatin
23(1)
2.7.1 Gonosomal Derived Heterochromatin
23(1)
2.7.2 Gonosomal Derived Euchromatin
23(1)
2.7.2.1 Y-Chromosome
23(1)
2.7.2.2 X-Chromosome
23(1)
2.8 MG-CNVs
24(1)
3 Inheritance of CG-CNVs
25(4)
3.1 Familial CG-CNVs
25(1)
3.1.1 Familial CG-CNVs and Infertility
26(1)
3.2 De Novo CG-CNVs
26(2)
3.2.1 CG-CNVs and Tumors
27(1)
3.3 MG-CNVs
28(1)
4 Formation of CG-CNVs
29(8)
4.1 Acrocentric Chromosomes' Short-Arm Variants
29(2)
4.2 Variants of the Centromeric Regions
31(2)
4.3 Variants of Noncentromeric Heterochromatin
33(1)
4.4 Unbalanced Chromosome Abnormalities (UBCAs)
34(1)
4.5 Small Supernumerary Marker Chromosomes (sSMCs)
34(1)
4.6 Euchromatic Variants (EVs)
35(1)
4.7 Gonosomal-Derived Chromatin
35(1)
4.8 MG-CNVs
35(2)
5 Types of CG-CNVs
37(84)
5.1 Heterochromatic CG-CNVs
37(48)
5.1.1 Acrocentric Chromosomes' Short Arms
37(2)
5.1.1.1 Enlargement of Acrocentric Chromosomes' Short Arms
39(1)
5.1.1.1.1 Amplification of acrocentric short arm material
40(4)
5.1.1.1.2 Addition of heterochromatic material to the acrocentric short arms
44(1)
5.1.1.1.2.1 Unbalanced translocations between acrocentric short arms
45(1)
5.1.1.1.2.2 Unbalanced translocations involving acrocentric short arms and other heterochromatic material
46(2)
5.1.1.1.3 Addition of acrocentrics short arms to nonacrocentric q-arms or p-arms
48(1)
5.1.1.1.4 Insertion of acrocentric short arms to other chromosomes
49(2)
5.1.1.2 Loss of Material of Acrocentric Chromosomes' Short Arms
51(1)
5.1.1.3 Altered Acrocentric p-arms as Hints on Cryptic Unbalanced Aberrations
52(4)
5.1.2 Pericentric Regions of All Chromosomes
56(2)
5.1.2.1 Chromosome 1
58(1)
5.1.2.2 Chromosome 2
59(1)
5.1.2.3 Chromosome 3
60(1)
5.1.2.4 Chromosome 4
61(1)
5.1.2.5 Chromosome 5
62(1)
5.1.2.6 Chromosome 6
63(1)
5.1.2.7 Chromosome 7
64(1)
5.1.2.8 Chromosome 8
65(1)
5.1.2.9 Chromosome 9
65(3)
5.1.2.10 Chromosome 10
68(1)
5.1.2.11 Chromosome 11
69(1)
5.1.2.12 Chromosome 12
69(1)
5.1.2.13 Chromosome 13
70(1)
5.1.2.14 Chromosome 14
71(1)
5.1.2.15 Chromosome 15
72(1)
5.1.2.16 Chromosome 16
73(1)
5.1.2.17 Chromosome 17
74(1)
5.1.2.18 Chromosome 18
75(1)
5.1.2.19 Chromosome 19
76(1)
5.1.2.20 Chromosome 20
77(1)
5.1.2.21 Chromosome 21
77(1)
5.1.2.22 Chromosome 22
78(1)
5.1.2.23 X-Chromosome
79(1)
5.1.2.24 Y-Chromosome
80(1)
5.1.2.25 Insertion of Pericentric Material into Other Chromosomes
80(1)
5.1.2.26 MG-CNVs of the pericentric regions
81(1)
5.1.3 Gonosomal-Derived Heterochromatin
82(1)
5.1.3.1 Size Variations of Yq12
82(1)
5.1.3.2 Addition of Yq12 to Other Chromosomal Ends
83(1)
5.1.3.3 Insertion of Yq12
83(1)
5.1.3.4 MG-CNVs of Yq12
83(1)
5.1.4 Heterochromatic sSMC
83(2)
5.2 Euchromatic CG-CNVs
85(18)
5.2.1 Euchromatic Gain without Clinical Consequences
86(1)
5.2.1.1 Chromosome 1
86(1)
5.2.1.2 Chromosome 2
86(2)
5.2.1.3 Chromosome 3
88(1)
5.2.1.4 Chromosome 4
89(1)
5.2.1.5 Chromosome 5
89(2)
5.2.1.6 Chromosome 6
91(1)
5.2.1.7 Chromosome 7
92(1)
5.2.1.8 Chromosome 8
93(1)
5.2.1.9 Chromosome 9
94(1)
5.2.1.10 Chromosome 10
95(1)
5.2.1.11 Chromosome 11
95(1)
5.2.1.12 Chromosome 12
96(1)
5.2.1.13 Chromosome 13
96(2)
5.2.1.14 Chromosome 14
98(1)
5.2.1.15 Chromosome 15
98(1)
52.1.16 Chromosome 16
98(1)
5.2.1.17 Chromosome 17
99(1)
5.2.1.18 Chromosome 18
99(1)
5.2.1.19 Chromosome 19
100(1)
5.2.1.20 Chromosome 20
100(1)
5.2.1.21 Chromosome 21
100(1)
52.1.22 Chromosome 22
101(1)
5.2.123 X-Chromosome
102(1)
5.2.1.24 Y-Chromosome
102(1)
5.2.2 Euchromatic Loss without Clinical Consequences
103(1)
522.1 Chromosome 1
103(13)
5.2.2.2 Chromosome 2
103(1)
5.2.2.3 Chromosome 3
103(2)
5.2.2.4 Chromosome 4
105(1)
5.2.2.5 Chromosome 5
106(1)
5.2.2.6 Chromosome 6
107(1)
5.2.2.7 Chromosome 7
107(1)
5.2.2.8 Chromosome 8
107(1)
52.2.9 Chromosome 9
108(1)
5.2.2.10 Chromosome 10
109(1)
5.2.2.11 Chromosome 11
109(1)
5.2.2.12 Chromosome 12
110(1)
5.22.13 Chromosome 13
110(1)
5.2.2.14 Chromosome 14
110(2)
5.2.2.15 Chromosome 15
112(1)
5.2.2.16 Chromosome 16
112(1)
52.2.17 Chromosome 17
112(1)
5.2.2.18 Chromosome 18
113(1)
5.2.2.19 Chromosome 19
113(1)
5.2.2.20 Chromosome 20
113(1)
5.2.2.21 Chromosome 21
114(1)
5.2.222 Chromosome 22
115(1)
5.2.2.23 X-Chromosome
115(1)
5.2.2.24 Y-Chromosome
115(1)
5.2.3 X-Autosome Translocations
115(1)
5.3 Submicroscopic CNVs (MG-CNVs)
116(5)
5.3.1 Benign Variants
116(1)
5.3.2 Pathologic Variants
116(5)
6 CG-CNVs in Genetic Diagnostics and Counseling
121(6)
6.1 CG-CNVs in Diagnostics
121(3)
6.1.1 First Steps: Banding Cytogenetics
121(1)
6.1.1.1 Other Cytogenetic Approaches
121(1)
6.1.2 Molecular Cytogenetics
122(1)
6.1.3 Molecular Genetics
122(1)
6.1.4 How to Characterize CG-CNVs and MG-CNVs in Diagnostics
123(1)
6.1.4.1 Heterochromatic CG-CNVs
123(1)
6.1.4.2 Euchromatic CG-CNVs
123(1)
6.1.4.3 MG-CNVs
124(1)
6.2 CG-CNVs and MG-CNVs in Reporting and Genetic Counseling
124(3)
6.2.1 Heterochromatic CG-CNVs in Reporting and Genetic Counseling
124(1)
6.2.2 Euchromatic CG-CNVs and MG-CNVs in Reporting and Genetic Counseling
125(2)
7 Online Resources
127(4)
7.1 CG-CNVs
127(1)
7.2 MG-CNVs
128(3)
Appendix: Summary of CG-CNVs 131(20)
Chromosome
References 151(38)
Index 189
A graduate of the Friedrich-Alexander University of Erlangen, Germany, Thomas Liehr became head of the Molecular Cytogenetic group at the Institute of Human Genetics in Jena in 1998. He is a molecular cytogeneticist with a research interest and more than 800 publications on inherited and acquired marker and derivative chromosomes, karyotype evolution, epigenetics including uniparental disomy, interphase architecture, heterochromatin, and probe set developments. In addition to being in the Editorial Board of the Journal of Histochemistry and Cytochemistry, Dr. Liehr is on the Editorial Board of 16 other journals including the European Journal of Medical Genetics (EJMG) and Oncology Letters. Also, he is the Editor of the online journal Molecular Cytogenetics and has edited seven special issues for different journals. He is a past recipient of the Research Award for Young Scientists of the Friedrich-Schiller University, Jena, invited professor and honorary doctor at Yerevan State University, Armenia, and invited professor at Belgrade Medical School, Serbia. Also, he received the Golden Medal of the Yerevan State University in 2014, Golden Medal of the Research Center for Medical Genetics in 2019, and Medal in memory of Prof. Yuri Yurov in 2019 (see also http://cs-tl.de/TL.html).