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1 Overview of Biophotonics |
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1 | (24) |
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1.1 What Is Biophotonics? |
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2 | (4) |
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6 | (2) |
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1.3 Biophotonics Spectral Windows |
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8 | (3) |
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11 | (1) |
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12 | (2) |
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1.6 Structures of Biological Cells and Tissues |
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14 | (6) |
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15 | (2) |
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17 | (2) |
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1.6.3 Biological Tissues and Organs |
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19 | (1) |
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20 | (1) |
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21 | (4) |
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22 | (3) |
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2 Basic Principles of Light |
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25 | (28) |
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2.1 Lightwave Characteristics |
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26 | (3) |
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2.1.1 Monochromatic Waves |
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27 | (2) |
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29 | (1) |
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29 | (6) |
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2.2.1 Linear Polarization |
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31 | (2) |
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2.2.2 Elliptical and Circular Polarization |
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33 | (2) |
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2.3 Quantized Photon Energy and Momentum |
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35 | (2) |
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2.4 Reflection and Refraction |
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37 | (7) |
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38 | (2) |
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2.4.2 The Fresnel Equations |
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40 | (3) |
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43 | (1) |
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44 | (1) |
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45 | (1) |
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2.7 Lightwave-Molecular Dipole Interaction |
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46 | (2) |
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48 | (1) |
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49 | (4) |
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51 | (2) |
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3 Optical Fibers for Biophotonics Applications |
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53 | (38) |
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3.1 Light Guiding Principles in Conventional Optical Fibers |
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54 | (10) |
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3.1.1 Ray Optics Concepts |
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57 | (3) |
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60 | (3) |
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3.1.3 Mode Field Diameter |
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63 | (1) |
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3.2 Graded-Index Optical Fibers |
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64 | (2) |
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3.2.1 Core Index Structure |
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64 | (1) |
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3.2.2 Graded-Index Numerical Aperture |
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65 | (1) |
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3.2.3 Cutoff Condition in Graded-Index Fibers |
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66 | (1) |
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3.3 Performance Characteristics of Generic Optical Fibers |
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66 | (2) |
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3.3.1 Attenuation Versus Wavelength |
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66 | (1) |
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3.3.2 Bend-Loss Insensitivity |
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67 | (1) |
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3.3.3 Mechanical Properties |
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67 | (1) |
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3.3.4 Optical Power-Handling Capability |
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68 | (1) |
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3.4 Conventional Solid-Core Fibers |
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68 | (1) |
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3.5 Specialty Solid-Core Fibers |
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69 | (6) |
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3.5.1 Photosensitive Optical Fiber |
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70 | (1) |
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3.5.2 Fibers Resistant to UV-Induced Darkening |
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71 | (1) |
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3.5.3 Bend Insensitive Fiber |
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72 | (1) |
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3.5.4 Polarization-Maintaining Fiber |
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73 | (2) |
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75 | (1) |
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3.7 Hard-Clad Silica Fibers |
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76 | (1) |
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3.8 Coated Hollow-Core Fibers |
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77 | (1) |
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3.9 Photonic Crystal Fibers |
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78 | (1) |
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79 | (1) |
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3.11 Side-Emitting or Glowing Fibers |
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80 | (1) |
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3.12 Middle-Infrared Fibers |
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81 | (2) |
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3.13 Optical Fiber Bundles |
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83 | (1) |
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84 | (1) |
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85 | (6) |
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87 | (4) |
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4 Fundamentals of Light Sources |
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91 | (28) |
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93 | (4) |
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4.1.1 Optical Flux and Power |
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94 | (1) |
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4.1.2 Irradiance or Exposure Rate |
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94 | (1) |
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95 | (1) |
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4.1.4 Radiant Exposure or Radiant Fluence |
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96 | (1) |
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96 | (1) |
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97 | (1) |
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4.3 Light-Emitting Diodes |
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98 | (7) |
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4.6.1 LED Operation and Structures |
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99 | (2) |
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4.3.2 LED Wavelengths and Device Uses |
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101 | (1) |
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4.3.3 Modulation of an LED |
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102 | (3) |
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4.4 Lasers for Biophotonics |
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105 | (9) |
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4.4.1 Basic Laser Actions |
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106 | (2) |
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108 | (3) |
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111 | (2) |
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113 | (1) |
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4.4.5 Optical Fiber Lasers |
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114 | (1) |
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4.5 Superluminescent Diodes |
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114 | (1) |
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115 | (1) |
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115 | (4) |
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117 | (2) |
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5 Fundamentals of Optical Detectors |
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119 | (28) |
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5.1 The pin Photodetector |
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120 | (7) |
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5.2 Avalanche Photodiodes |
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127 | (1) |
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128 | (5) |
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5.3.1 Signal-to-Noise Ratio |
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128 | (1) |
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129 | (2) |
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5.3.3 Noise-Equivalent Power and Detectivity |
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131 | (1) |
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5.3.4 Comparisons of Photodiodes |
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132 | (1) |
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5.4 Multichannel Detectors |
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133 | (3) |
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5.4.1 CCD Array Technology |
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133 | (1) |
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5.4.2 CMOS Array Technology |
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134 | (2) |
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5.5 Photomultiplier Tubes |
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136 | (2) |
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138 | (3) |
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5.7 Optical Couplers and Optical Circulators |
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141 | (2) |
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143 | (1) |
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143 | (4) |
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145 | (2) |
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6 Light-Tissue Interactions |
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147 | (50) |
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6.1 Reflection and Refraction Applications |
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149 | (5) |
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6.1.1 Refraction in Ophthalmology |
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150 | (1) |
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6.1.2 Specular Reflection |
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150 | (3) |
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153 | (1) |
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154 | (6) |
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6.2.1 Absorption Characteristics |
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154 | (3) |
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6.2.2 Absorption in Biological Tissues |
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157 | (3) |
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160 | (9) |
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162 | (3) |
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6.3.2 Rayleigh Scattering |
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165 | (2) |
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167 | (1) |
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6.3.4 Inelastic (Raman) Scattering |
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168 | (1) |
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6.4 Scattering with Absorption |
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169 | (1) |
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6.5 Light-Tissue Interaction Mechanisms |
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170 | (18) |
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174 | (3) |
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6.5.2 Photochemical Interaction |
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177 | (2) |
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6.5.3 Thermal Interaction |
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179 | (4) |
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183 | (3) |
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6.5.5 Plasma-Induced Photoablation |
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186 | (1) |
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187 | (1) |
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6.6 Formation of Speckles |
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188 | (1) |
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189 | (1) |
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190 | (2) |
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192 | (5) |
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193 | (4) |
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7 Optical Probes and Biosensors |
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197 | (36) |
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7.1 Overview of Biosensors and Probes |
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198 | (2) |
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7.2 Optical Fiber Probe Configurations |
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200 | (6) |
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7.3 Optical Fiber Tip Geometries |
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206 | (3) |
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209 | (7) |
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7.4.1 Biorecognition Optical Fiber Sensors |
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209 | (1) |
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210 | (1) |
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7.4.3 Sensors Based on Optical Fiber Movements |
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211 | (3) |
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7.4.4 Microbending Fiber Sensors |
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214 | (2) |
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7.5 Interferometric Sensors |
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216 | (5) |
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7.5.1 Mach-Zehnder Interferometer |
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217 | (2) |
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7.5.2 Michelson Interferometer |
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219 | (1) |
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7.5.3 Sagnac Interferometer |
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220 | (1) |
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7.6 Photonic Crystal Fiber Biosensors |
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221 | (2) |
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7.6.1 Interferometry Sensing Methods |
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221 | (1) |
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7.6.2 Liquid Infiltration Sensor |
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222 | (1) |
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7.7 Fiber Bragg Grating Sensors |
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223 | (2) |
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7.7.1 Smart-Bed FBG System |
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223 | (1) |
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7.7.2 Distributed FBG-Based Catheter Sensor |
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224 | (1) |
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7.8 Surface Plasmon Resonance Biosensors |
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225 | (1) |
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7.9 Optical Fiber Nanoprobes |
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226 | (1) |
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227 | (1) |
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227 | (6) |
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229 | (4) |
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233 | (26) |
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8.1 Concepts and Principles of Microscopy |
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234 | (10) |
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8.1.1 Viewing and Illumination Techniques |
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234 | (3) |
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8.1.2 Observation Methods |
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237 | (3) |
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240 | (1) |
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241 | (1) |
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242 | (2) |
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8.2 Resolution and Diffraction Limit |
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244 | (3) |
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247 | (2) |
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8.4 Fluorescence Microscopy |
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249 | (2) |
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8.5 Multiphoton Microscopy |
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251 | (2) |
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253 | (1) |
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8.7 Light Sheet Fluorescence Microscopy |
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254 | (1) |
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8.8 Super-Resolution Fluorescence Microscopy |
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255 | (1) |
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255 | (1) |
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256 | (3) |
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257 | (2) |
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9 Spectroscopic Methodologies |
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259 | (32) |
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9.1 Fluorescence Spectroscopy |
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261 | (2) |
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263 | (6) |
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9.2.1 Forster Resonance Energy Transfer |
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263 | (3) |
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9.2.2 Fluorescence Lifetime Imaging Microscopy |
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266 | (3) |
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9.3 Fluorescence Correlation Spectroscopy |
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269 | (4) |
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9.4 Elastic Scattering Spectroscopy |
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273 | (2) |
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9.5 Diffuse Correlation Spectroscopy |
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275 | (1) |
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276 | (3) |
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9.7 Surface Enhanced Raman Scattering Spectroscopy |
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279 | (1) |
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9.8 Coherent Anti-stokes Raman Scattering Spectroscopy |
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280 | (2) |
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9.9 Stimulated Raman Scattering Spectroscopy |
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282 | (1) |
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9.10 Photon Correlation Spectroscopy |
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282 | (2) |
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9.11 Fourier Transform Infrared Spectroscopy |
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284 | (1) |
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9.12 Brillouin Scattering Spectroscopy |
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285 | (1) |
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286 | (1) |
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286 | (5) |
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288 | (3) |
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10 Optical Imaging Procedures |
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291 | (32) |
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10.1 Optical Coherence Tomography |
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292 | (11) |
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294 | (7) |
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10.1.2 Spectral Domain OCT |
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301 | (1) |
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301 | (2) |
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303 | (4) |
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304 | (1) |
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10.2.2 Minimally Invasive Surgery |
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305 | (2) |
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10.2.3 Tethered Capsule Endomicroscopy |
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307 | (1) |
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10.3 Laser Speckle Imaging |
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307 | (3) |
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10.4 Optical Coherence Elastography |
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310 | (2) |
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10.5 Photoacoustic Tomography |
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312 | (4) |
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10.6 Hyperspectral Imaging |
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316 | (1) |
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317 | (1) |
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317 | (6) |
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319 | (4) |
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11 Biophotonics Technology Applications |
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323 | |
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11.1 Optical Manipulation |
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324 | (5) |
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11.2 Miniaturized Analyses Tools |
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329 | (3) |
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11.2.1 Lab-on-a-Chip Technology |
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329 | (2) |
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11.2.2 Lab-on-Fiber Concept |
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331 | (1) |
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11.3 Microscope in a Needle |
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332 | (1) |
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11.4 Single Nanoparticle Detection |
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333 | (1) |
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334 | (1) |
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335 | (1) |
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335 | |
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336 | |
Erratum to: Biophotonics |
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1 | (338) |
Index |
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339 | |