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E-raamat: Chemical Tools for Imaging, Manipulating, and Tracking Biological Systems: Diverse Methods Based on Optical Imaging and Fluorescence

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  • Formaat: EPUB+DRM
  • Sari: Methods in Enzymology
  • Ilmumisaeg: 17-Jun-2020
  • Kirjastus: Academic Press Inc
  • Keel: eng
  • ISBN-13: 9780128211540
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  • Formaat: EPUB+DRM
  • Sari: Methods in Enzymology
  • Ilmumisaeg: 17-Jun-2020
  • Kirjastus: Academic Press Inc
  • Keel: eng
  • ISBN-13: 9780128211540
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This new volume of Methods in Enzymology continues the legacy of this premier serial with quality chapters authored by leaders in the field.

  • Provides the authority and expertise of leading contributors from an international board of authors
  • Presents the latest release in the Methods in Enzymology series
  • Includes the latest information on retinoid signaling pathways
Contributors xi
Preface xv
1 Fluorescent detection of peroxynitrite during antibody-dependent cellular phagocytosis
1(36)
Digamber Rane
Erick J. Carlson
Yuwen Yin
Blake R. Peterson
1 Introduction
2(6)
2 Synthesis of peroxynitrite sensor 3 (PS3)
8(7)
3 Photophysical properties, reactivity, and selectivity of PS3
15(6)
4 Detection of peroxynitrite resulting from antibody-dependent cellular phagocytosis (ADCP) of opsonized tentagel microspheres
21(9)
5 Future perspectives
30(1)
Acknowledgments
30(1)
References
31(6)
2 Synthesis, evaluation, and biological applications of visible-light-controllable nitric oxide releasers
37(26)
Naoya Leda
Hidehiko Nakagawa
1 Introduction
38(1)
2 Protocols: Synthesis
39(10)
3 Protocols: ESR spin trapping method with iron-dithiocarbamate complex
49(2)
4 Protocols: NO electrode
51(2)
5 Protocols: NO detection by fluorescence probes
53(3)
6 Protocols: Determination of quantum yield
56(2)
7 Protocols: Photocontrol of vasodilation using rat aorta strip
58(2)
8 Summary
60(1)
Acknowledgment
60(1)
References
60(3)
3 Design of fluorescent protein-based sensors through a general protection-deprotection strategy
63(20)
Gloricelly M. Roman-Arocho
Xin Shang
Wei Niu
Jiantao Guo
1 Introduction
64(1)
2 Site-specific incorporation of noncanonical amino acids into proteins
65(6)
3 A fluorescent protein-based mercury (li) sensor
71(6)
4 Concluding remarks
77(2)
Acknowledgments
79(1)
References
79(4)
4 Chemiluminescent sensors for quantitation of the bacterial second messenger cyclic di-GMP
83(22)
Wyatt A. Anderson
Andrew B. Dippel
Michael M. Maiden
Christopher M. Waters
Ming C. Hammond
1 Introduction
84(3)
2 Biosensor expression and purification
87(8)
3 Generating a standard curve for quantitating c-di-GMP
95(4)
4 Bacterial cell extract analysis
99(4)
Acknowledgments
103(1)
References
103(2)
5 Calcium-responsive liposomes: Toward ion-mediated targeted drug delivery
105(26)
Jinchao Lou
Michael D. Best
1 Introduction
106(3)
2 Synthesis of calcium-responsive lipid 1
109(7)
3 Liposome preparation (three types of samples, with encapsulated Nile red, sulforhodamine B and without dye)
116(3)
4 Nile red release assay
119(2)
5 SRB release assay
121(1)
6 Nile red release with other metal ions
122(1)
7 DLS analysis
123(2)
8 STEM imaging
125(2)
9 Summary and conclusions
127(1)
Acknowledgments
127(1)
References
127(4)
6 Far-red photoactivatable BODIPYs for the super-resolution imaging of live cells
131(18)
Yang Zhang
Sicheng Tang
Laura Ravelo
Janet Cusido
Franqisco M. Raymo
1 Introduction
132(2)
2 Equipment and materials
134(6)
3 Methods
140(2)
4 Analysis
142(3)
5 Notes
145(1)
6 Summary and conclusions
146(1)
Acknowledgment
146(1)
References
146(3)
7 Washington Red (WR) dyes and their imaging applications
149(16)
Wei Chen
Ming Xian
1 Introduction
149(2)
2 Rational design and chemical structures of WR dyes
151(1)
3 PhotophysicaI properties of WR dyes
152(2)
4 Applications of WR dyes in developing NIR probes to image H2S in cells
154(7)
5 Conclusions
161(1)
Acknowledgments
162(1)
References
162(3)
8 Bioluminescence imaging in mice with synthetic luciferin analogues
165(20)
Xincai Ji
Spencer T. Adams
Stephen C. Miller
1 Introduction
166(4)
2 General considerations for in vivo imaging with synthetic luciferins
170(2)
3 Imaging of transgenic luciferase mice
172(3)
4 Imaging using adeno-associated viral (AAV) reporters
175(3)
5 Considerations for marine luciferases and luciferins
178(1)
6 Summary
179(1)
Acknowledgments
179(1)
References
179(6)
9 Monitoring neuronal activity with voltage-sensitive fluorophores
185(20)
Molly J. Kirk
Benjamin K. Raliski
Evan W. Miller
1 Introduction
186(1)
2 Voltage imaging with voltage-sensitive fluorophores
187(4)
3 Primary hippocampal cell culture
191(3)
4 Functional voltage imaging of cultured neurons
194(5)
5 Analysis and interpretation of functional imaging data
199(1)
6 Summary
200(1)
7 Solutions
201(1)
Acknowledgment
202(1)
References
202(3)
10 Temporally gated molecular tools for tracking protein-protein interactions in live cells
205(20)
Kayla E. Kroning
Wenjing Wang
1 Introduction
206(1)
2 SPARK for detecting protein-protein interactions in live cells
207(3)
3 Applying SPARK to detect agonist induced B2AR-GS mimic and B2AR-arrestin interaction
210(4)
4 Protocol
214(8)
5 Summary
222(1)
Acknowledgment
222(1)
References
222(3)
11 trLRET microscopy: Ultrasensitive imaging of lanthanide luminophores
225(24)
Paulina Ciepla
Ukrae Cho
James K. Chen
1 Introduction
226(2)
2 Conceptual basis for trLRET imaging
228(3)
3 Protocol
231(15)
4 Conclusion
246(1)
Acknowledgments
247(1)
References
247(2)
12 Long fluorescence lifetime triangulenium dyes in imaging and fluorescence polarization assay
249(18)
Bo W. Laursen
Sidsel A. Bogh
Thomas Just Sorensen
1 Introduction
250(5)
2 Labeling of proteins with reactive triangulenium dyes
255(1)
3 Protocol
256(1)
4 Analysis of the bioconjugate (and complex)
257(5)
5 Summary
262(1)
Acknowledgment
262(1)
Conflict of interest
262(1)
References
263(4)
13 Didactic approach recounting advances and limitations in novel glutathione and cysteine detection (reduced GSH probe) with mixed coumarin, aldehyde, and phenyl-selenium chemistry
267(24)
Woohyun Lee
Sandip V. Mulay
Shingo Shimodaira
Ariq Abdillah
Jaymee Palma
Youngsam Kim
Tesla Yudhistira
David G. Churchill
1 Introduction
269(2)
2 Protocols and a discussion of materials, equipment, and reagents
271(12)
3 Remaining questions, concerns, caveats
283(2)
4 Conclusions and future outlook
285(1)
Acknowledgments
286(1)
Disclosures
286(1)
References
286(3)
Further reading
289(2)
14 Detection of cell-surface phosphatidylserine using the fluorogenic probe P-IID
291(18)
Vincent E. Zwicker
Jia Hao Yeo
Stuart T. Fraser
Elizabeth J. New
Katrina A. Jolliffe
1 Introduction
292(2)
2 Principle of the detection of apoptotic cells with P-IID
294(1)
3 Methods
294(3)
4 Fluorescence imaging
297(2)
5 Flow cytometry
299(7)
6 Concluding remarks
306(1)
Acknowledgments
306(1)
References
306(3)
15 Quinoline-based fluorescent small molecules for live cell imaging
309
Rachel M. Lackner
Joomyung V. Jun
E. James Petersson
David M. Chenoweth
1 Introduction
310(3)
2 Chemical synthesis
313(7)
3 Plate reader analysis of DMAQ derivatives
320(2)
4 Cell imaging of an environmentally sensitive dye
322(2)
5 Summary and conclusions
324(1)
References
325
David Chenoweth is at University of Pennsylvania, PA, USA