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E-raamat: Computational Methods in Systems Biology: 15th International Conference, CMSB 2017, Darmstadt, Germany, September 27-29, 2017, Proceedings

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  • Sari: Lecture Notes in Bioinformatics 10545
  • Ilmumisaeg: 18-Sep-2017
  • Kirjastus: Springer International Publishing AG
  • Keel: eng
  • ISBN-13: 9783319674711
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  • Formaat: PDF+DRM
  • Sari: Lecture Notes in Bioinformatics 10545
  • Ilmumisaeg: 18-Sep-2017
  • Kirjastus: Springer International Publishing AG
  • Keel: eng
  • ISBN-13: 9783319674711

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This book constitutes the refereed proceedings of the 15th International Conference on Computational Methods in Systems Biology, CMSB 2017, held in Darmstadt, Germany, in September 2017. The 15 full papers, 4 tool papers and 4 posters presented together with 1 invited talk were carefully reviewed and selected from 41  regular paper submissions. Topics of interest include formalisms for modeling  biological processes; models and their biological applications; frameworks for model verication, validation, analysis, and simulation of biological systems; high-performance computational systems biology and parallel implementations; model inference from experimental data; model integration from biological databases; multi-scale modeling and analysis methods; and computational approaches for synthetic biology.
Invited Paper
Bio-Curation for Cellular Signalling: The KAMI Project
3(20)
Russ Harmer
Yves-Stan Le Cornec
Sebastien Legare
Ievgeniia Oshurko
Regular Papers
Quantitative Regular Expressions for Arrhythmia Detection Algorithms
23(17)
Houssam Abbas
Alena Rodionova
Ezio Bartocci
Scott A. Smolka
Radu Grosu
Detecting Attractors in Biological Models with Uncertain Parameters
40(17)
Jiri Barnat
Nikola Benes
Lubos Brim
Martin Demko
Matej Hajnal
Samuel Pastva
David Safranek
Abduction Based Drug Target Discovery Using Boolean Control Network
57(17)
Celia Biane
Franck Delaplace
Probably Approximately Correct Learning of Regulatory Networks from Time-Series Data
74(17)
Arthur Carcano
Francois Fages
Sylvain Soliman
Identifying Functional Families of Trajectories in Biological Pathways by Soft Clustering: Application to TGF-β Signaling
91(17)
Jean Coquet
Nathalie Theret
Vincent Legagneux
Olivier Dameron
Strong Turing Completeness of Continuous Chemical Reaction Networks and Compilation of Mixed Analog-Digital Programs
108(20)
Francois Fages
Guillaume Le Guludec
Olivier Bournez
Amaury Pouly
A Scheme for Adaptive Selection of Population Sizes in Approximate Bayesian Computation - Sequential Monte Carlo
128(17)
Emmanuel Klinger
Jan Hasenauer
Methods to Expand Cell Signaling Models Using Automated Reading and Model Checking
145(15)
Kai-Wen Liang
Qinsi Wang
Cheryl Telmer
Divyaa Ravichandran
Peter Spines
Natasa Miskov-Zivanov
A Stochastic Model for the Formation of Spatial Methylation Patterns
160(19)
Alexander Luck
Pascal Giehr
Jorn Walter
Verena Wolf
Temporal Reprogramming of Boolean Networks
179(17)
Hugues Mandon
Stefan Haar
Loic Pauleve
Detecting Toxicity Pathways with a Formal Framework Based on Equilibrium Changes
196(18)
Benjamin Miraglio
Gilles Bernot
Jean-Paul Comet
Christine Risso-de Faverney
Data-Driven Robust Control for Type 1 Diabetes Under Meal and Exercise Uncertainties
214(19)
Nicola Paoletti
Kin Sum Liu
Scott A. Smolka
Shan Lin
Graph Representations of Monotonic Boolean Model Pools
233(16)
Robert Schwieger
Heike Siebert
Explaining Response to Drugs Using Pathway Logic
249(16)
Carolyn Talcott
Merrill Knapp
Automated Property Synthesis of ODEs Based Bio-pathways Models
265(20)
Jun Zhou
R. Ramanathan
Weng-Fai Wong
P.S. Thiagarajan
Tool Papers
TransferEntropyPT: An R Package to Assess Transfer Entropies via Permutation Tests
285(6)
Patrick Boba
Kay Hamacher
KaDE: A Tool to Compile Kappa Rules into (Reduced) ODE Models
291(9)
Ferdinanda Camporesi
Jerome Feret
Kim Quyen Ly
Database of Dynamic Signatures Generated by Regulatory Networks (DSGRN)
300(9)
Bree Cummins
Tomas Gedeon
Shaun Harker
Konstantin Mischaikow
Pint: A Static Analyzer for Transient Dynamics of Qualitative Networks with IPython Interface
309(10)
Loic Pauleve
Posters
Discrete Bifurcation Analysis with Pithya
319(2)
Nikola Benes
Lubos Brim
Martin Demko
Matej Hajnal
Samuel Pastva
David Safranek
Discrete Stochastic Graph Dynamics for the Nuclear Architecture of Mouse Meiotic Prophase Spermatocytes (Extended Abstract)
321(3)
Julio Lopez Fenner
Aude Maignan
Rachid Echahed
Soledad Berrios
Non-disjoint Clustered Representation for Distributions over a Population of Cells
324(3)
Matthieu Pichene
Sucheendra Palaniappan
Eric Fabre
Blaise Genest
Effects of the Dynamics of the Steps in Transcription Initiation on the Asymmetry of the Distribution of Time Intervals Between Consecutive RNA Productions
327(4)
Sofia Siartceva
Vinodh Kumar Kandavalli
Ari Visa
Andre S. Ribeiro
Author Index 331