| Preface |
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xiii | |
| Author |
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xv | |
| Chapter 1 Introduction to Human Cytochrome P450 Superfamily |
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1 | (100) |
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1.1 The Cytochrome P450s in Nature |
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1 | (2) |
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1.2 Human CYP Superfamily |
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3 | (19) |
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1.2.1 Members of the CYP Superfamily: Family, Subfamily, Clan, and Motif |
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3 | (12) |
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1.2.2 Subcellular Location of CYPs |
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15 | (1) |
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1.2.3 CYP-Mediated Metabolism of Xenobiotics and Endogenous Compounds |
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16 | (1) |
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1.2.4 Structural Features of CYPs |
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17 | (2) |
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19 | (1) |
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1.2.6 Regulation of CYPs via Nuclear Receptors, miRNAs, Inflammation, and Cytokines |
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19 | (2) |
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1.2.7 Phenotypes and Polymorphisms of CYPs |
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21 | (1) |
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1.2.8 CYP-Related Diseases |
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22 | (1) |
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22 | (4) |
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1.3.1 CYP1A1 (Aryl Hydrocarbon Hydroxylase) |
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23 | (1) |
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1.3.2 CYP1A2 (Aryl Hydrocarbon Hydroxylase) |
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24 | (1) |
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1.3.3 CYP1B1 (Aryl Hydrocarbon Hydroxylase) |
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25 | (1) |
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1.4 Human CYP2ABFGST Cluster: CYP2A6, 2A7, 2A13, 2B6, 2F1, and 2S1 |
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26 | (6) |
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1.4.1 CYP2A6 (Coumarin 7-Hydroxylase) |
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26 | (2) |
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28 | (1) |
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28 | (1) |
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29 | (2) |
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31 | (1) |
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31 | (1) |
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1.5 Human CYP2C Cluster: CYP2C8, 2C9, 2C18, and 2C19 |
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32 | (4) |
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32 | (1) |
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33 | (2) |
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1.5.3 CYP2C18 (S-Mephenytoin Hydroxylase) |
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35 | (1) |
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35 | (1) |
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1.6 Other Human CYP2 Family Members |
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36 | (4) |
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36 | (1) |
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37 | (1) |
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37 | (1) |
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38 | (1) |
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39 | (1) |
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39 | (1) |
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1.7 Human CYP3A Cluster: CYP3A4, 3A5, 3A7, and 3A43 |
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40 | (4) |
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40 | (3) |
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43 | (1) |
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43 | (1) |
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44 | (1) |
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1.8 Human CYP4ABXZ Cluster: CYP4A11, 4A22, 4B1, 4X1, and 4Z1 |
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44 | (1) |
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1.8.1 CYP4A11 (20-Hydroxyeicosatetraenoic Acid Synthase, Fatty Acid ω-Hydroxylase, and Lauric Acid ω-Hydroxylase) |
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44 | (1) |
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1.8.2 CYP4A22 (Fatty Acid ω-Hydroxylase and Lauric Acid ω-Hydroxylase) |
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45 | (1) |
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45 | (1) |
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1.9 Human CYP4F Cluster: CYP4F2, 4F3, 4F8, 4F11, 4F12, and 4F22 |
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45 | (2) |
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1.9.1 CYP4F2 (20-Hydroxyeicosatetraenoic Acid Synthase, Arachidonic Acid ω-Hydroxylase, and Leukotriene-B4 ω-Hydroxylase 1) |
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45 | (1) |
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46 | (1) |
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46 | (1) |
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1.9.4 CYP4F11 (Phylloquinone ω-Hydroxylase and 3-Hydroxy Fatty Acid ω-Hydroxylase) |
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46 | (1) |
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46 | (1) |
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47 | (1) |
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1.10 Other Human CYP4 Family Members |
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47 | (1) |
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1.10.1 CYP4V2 (Docosahexaenoic Acid ω-Hydroxylase) |
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47 | (1) |
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47 | (1) |
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47 | (1) |
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48 | (1) |
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1.11.1 CYP5A1 (Thromboxane A Synthase 1, TBXAS1) |
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48 | (1) |
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48 | (1) |
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1.12.1 CYP7A1 (Cholesterol 7α-Hydroxylase) |
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48 | (1) |
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1.12.2 CYP7B1 (Oxysterol 7α-Hydroxylase 1) |
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49 | (1) |
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49 | (1) |
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1.13.1 CYP8A1 (Prostaglandin I2 Synthase, PGIS/PTGIS) |
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49 | (1) |
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1.13.2 CYP8B1 (Sterol 12α-Hydroxylase) |
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50 | (1) |
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50 | (2) |
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1.14.1 CYP11A1 (Cholesterol Side-Chain Cleavage Enzyme) |
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50 | (1) |
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1.14.2 CYP11B1 (Steroid 11β-Hydroxylase) |
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51 | (1) |
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1.14.3 CYPI1B2 (Aldosterone Synthase/Steroid 11β/18-Hydroxylase) |
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51 | (1) |
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52 | (1) |
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1.15.1 CYP17A1 (Steroid 17α-Monooxygenase, 17α-Hydroxylase, 17,20 Lyase, and 17,20 Desmolase) |
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52 | (1) |
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53 | (1) |
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1.16.1 CYP19A1 (Aromatase) |
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53 | (1) |
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54 | (1) |
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54 | (1) |
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54 | (1) |
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1.18.1 CYP21A2 (Steroid 21-Hydroxylase) |
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54 | (1) |
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54 | (1) |
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1.19.1 CYP24A1 (1,25-Dihydroxyvitamin D3 24-Hydroxylase, Vitamin D 24-Hydroxylase/ Vitamin D3 24-Hydroxylase) |
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54 | (1) |
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55 | (2) |
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1.20.1 CYP26A1 (Retinoic Acid 4-Hydroxylase) |
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56 | (1) |
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56 | (1) |
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57 | (1) |
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57 | (2) |
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1.21.1 CYP27A1 (Sterol 27-Hydroxylase) |
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57 | (1) |
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1.21.2 CYP27B1 (Mitochondria) 25-Hydroxyvitamin D 1α-Hydroxylase) |
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58 | (1) |
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58 | (1) |
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1.22 Human CYP39A1, 46A1, and 51A1 |
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59 | (1) |
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1.22.1 CYP39A1 (Oxysterol 7α-Hydroxylase 2) |
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59 | (1) |
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59 | (1) |
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1.23.1 CYP46A1 (Cholesterol 24-Hydroxylase) |
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59 | (1) |
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59 | (1) |
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1.24.1 CYP51A1 (Lanosterol 14α-Demethylase/Sterol 14α-Demethylase) |
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59 | (1) |
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1.25 Highlights of This Book |
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60 | (1) |
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60 | (41) |
| Chapter 2 Mammalian CYP2D Members: A Comparison of Structure, Function, and Regulation |
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101 | (38) |
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101 | (1) |
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2.2 Rat Cyp2d Subfamily: Cyp2d1, 2d2, 2d3, 2d4, and 2d5 |
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102 | (17) |
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2.2.1 Tissue Distribution of Rat Cyp2ds |
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102 | (10) |
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2.2.2 Substrates of Rat Cyp2ds |
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112 | (1) |
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2.2.3 Differences in Rat Cyp2d-Dependent Metabolism |
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113 | (1) |
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2.2.4 Dark Agouti Rats as a Cyp2d2-Deficient Model |
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114 | (3) |
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2.2.5 Regulation of Rat Cyp2ds |
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117 | (1) |
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2.2.6 Inhibitors of Rat CYP2ds and Cyp2d-Mediated Drug-Drug Interactions |
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118 | (1) |
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2.3 Mouse Cyp2d Subfamily: Cyp2d9-2d13, 2d22, 2d26, 2d34, and 2d40 |
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119 | (2) |
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2.3.1 Tissue Distribution of Mouse Cyp2ds |
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119 | (1) |
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2.3.2 Substrate Specificity of Mouse Cyp2ds |
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120 | (1) |
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2.3.3 Cyp2d Knockout and CYP2D6 Transgenic Mouse Model |
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120 | (1) |
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121 | (1) |
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121 | (4) |
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2.5.1 Cloning and Purification of Dog CYP2D15 |
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122 | (1) |
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2.5.2 Tissue Distribution of Dog CYP2D15 |
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122 | (1) |
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2.5.3 Substrate Specificity of Dog CYP2D15 |
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122 | (2) |
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2.5.4 Induction of Dog CYP2D15 |
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124 | (1) |
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2.5.5 Inhibitors of Dog CYP2D15 |
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125 | (1) |
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125 | (1) |
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2.6.1 Tissue Distribution of Guinea Pig Cyp2d16 |
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125 | (1) |
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2.6.2 Substrate Specificity of Guinea Pig Cyp2d16 |
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125 | (1) |
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2.6.3 Regulation of Guinea Pig Cyp2d16 |
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125 | (1) |
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2.7 Macaque CYP2D17, 2D29, 2D42, and 2D44 |
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126 | (1) |
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2.7.1 Cynomolgus Monkey CYP2D17 and 2D44 |
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126 | (1) |
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2.7.2 Japanese Monkey CYP2D29 |
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127 | (1) |
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2.8 Marmoset CYP2D8, 2DI9, and 2D30 |
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127 | (1) |
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2.9 Rabbit CYP2D23 and CYP2D24 |
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128 | (1) |
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128 | (1) |
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2.10.1 Cloning and Purification of Pig CYP2D25 |
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128 | (1) |
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2.10.2 Catalytic Activity of Pig CYP2D25 |
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128 | (1) |
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2.11 Syrian Hamster Cyp2d27 |
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129 | (1) |
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129 | (1) |
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129 | (1) |
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2.14 Conclusions and Future Perspectives |
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130 | (1) |
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130 | (9) |
| Chapter 3 Substrates of Human CYP2D6 |
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139 | (150) |
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139 | (1) |
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139 | (2) |
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3.2.1 Sparteine and Debrisoquine |
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139 | (1) |
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140 | (1) |
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3.2.3 Bufuralol and Tramadol |
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140 | (1) |
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3.3 Therapeutic Drugs as Substrates of CYP2D6 |
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141 | (91) |
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3.3.1 Drugs Acting on the Central Nervous System |
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141 | (36) |
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3.3.1.1 Tricyclic Antidepressants |
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141 | (5) |
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3.3.1.2 Selective Serotonin Reuptake Inhibitors |
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146 | (5) |
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3.3.1.3 Other Antidepressants |
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151 | (2) |
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153 | (9) |
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162 | (1) |
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3.3.1.6 Opioids and Opioid Receptor Antagonists |
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162 | (3) |
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165 | (4) |
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3.3.1.8 Antimigraine Drugs |
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169 | (1) |
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3.3.1.9 Antiparkinsonism Agents |
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170 | (1) |
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3.3.1.10 Centrally Acting Cholinesterase Inhibitors |
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171 | (4) |
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3.3.1.11 Drugs for Senile Dementia |
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175 | (1) |
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3.3.1.12 Drugs for the Treatment of Attention-Deficit/Hyperactivity Disorder |
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175 | (1) |
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3.3.1.13 Nonnarcotic Analgesics |
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175 | (1) |
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3.3.1.14 Drugs for Huntington's Disease Chorea |
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176 | (1) |
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3.3.2 Cardiovascular Drugs |
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177 | (25) |
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3.3.2.1 Antianginal Drugs |
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177 | (3) |
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180 | (10) |
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3.3.2.3 Antiplatelet Agents |
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190 | (3) |
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193 | (5) |
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3.3.2.5 Calcium Channel Blockers |
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198 | (4) |
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202 | (6) |
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203 | (1) |
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203 | (1) |
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3.3.3.3 Cinnarizine and Flunarizine |
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203 | (1) |
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204 | (1) |
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204 | (1) |
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205 | (1) |
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205 | (2) |
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207 | (1) |
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208 | (7) |
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3.3.4.1 HIV Protease Inhibitors |
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208 | (2) |
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3.3.4.2 Nonnucleoside Reverse Transcriptase Inhibitors |
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210 | (5) |
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215 | (2) |
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215 | (1) |
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215 | (1) |
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215 | (2) |
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3.3.5.4 Phenoxypropoxybiguanides |
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217 | (1) |
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3.3.6 Hypolipidemic Agents |
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217 | (1) |
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217 | (1) |
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218 | (1) |
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3.3.7 Muscarinic Receptor Antagonists |
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218 | (1) |
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218 | (1) |
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3.3.8 Nonsteroidal Anti-Inflammatory Drugs |
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218 | (2) |
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218 | (2) |
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220 | (1) |
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3.3.9 Oral Hypoglycemic Drugs |
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220 | (1) |
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220 | (1) |
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3.3.10 Selective Estrogen Receptor Modulators |
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221 | (6) |
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222 | (4) |
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226 | (1) |
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226 | (1) |
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226 | (1) |
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3.3.11 Selective Phosphodiesterase Type 5 Inhibitors |
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227 | (1) |
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3.3.12 Other Drugs and Compounds |
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227 | (5) |
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3.4 Drugs of Abuse as Substrates of CYP2D6 |
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232 | (4) |
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3.4.1 Amphetamine Derivatives |
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232 | (1) |
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232 | (1) |
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233 | (1) |
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234 | (2) |
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3.5 Fluorescent Probes as Substrates of CYP2D6 |
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236 | (1) |
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3.6 Plant Alkaloids, Toxicants, and Environmental Compounds as Substrates of CYP2D6 |
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237 | (3) |
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237 | (1) |
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237 | (1) |
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3.6.3 Herbicides and Pesticides |
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238 | (2) |
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3.7 Endogenous Compounds as Substrates of CYP2D6 |
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240 | (5) |
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3.7.1 5-Methoxyindolethylamine |
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240 | (1) |
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240 | (1) |
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3.7.3 Steroids and Neurosteroids |
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241 | (3) |
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3.7.4 Endogenous Morphine |
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244 | (1) |
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3.7.5 Endocannabinoid Arachidonoylethanolamide (Anandamide) |
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244 | (1) |
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3.8 Structure-Activity Relationships of CYP2D6 Substrates |
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245 | (1) |
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3.9 Conclusions and Future Directions |
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246 | (10) |
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256 | (33) |
| Chapter 4 Inhibitors of Human CYP2D6 |
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289 | (26) |
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289 | (1) |
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4.2 Selective Inhibitors of CYP2D6 |
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289 | (10) |
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4.3 Mechanism-Based Inhibitors of CYP2D6 |
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299 | (1) |
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299 | (1) |
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299 | (1) |
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299 | (1) |
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300 | (1) |
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300 | (1) |
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4.4 Reversible and Mixed-Type Inhibitors of CYP2D6 |
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300 | (7) |
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4.4.1 Central Nervous System Drugs |
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300 | (3) |
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300 | (1) |
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301 | (1) |
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4.4.1.3 Tricyclic Antidepressants |
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302 | (1) |
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4.4.1.4 Other Antidepressants |
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302 | (1) |
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302 | (1) |
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4.4.1.6 Other Central Nervous System Drugs |
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302 | (1) |
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4.4.2 H1 Receptor Antagonists |
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303 | (1) |
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304 | (1) |
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304 | (1) |
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304 | (1) |
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304 | (2) |
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4.4.7 Amphetamine Analogs |
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306 | (1) |
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4.4.8 Natural and Herbal Compounds |
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307 | (1) |
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4.5 Structure-Activity Relationships of CYP2D6 Inhibitors |
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307 | (1) |
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4.6 Conclusions and Future Directions |
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308 | (1) |
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308 | (7) |
| Chapter 5 Regulation of Human CYP2D6 |
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315 | (26) |
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315 | (1) |
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5.2 Effects of Physiological Factors on CYP2D6 Activity |
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316 | (2) |
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316 | (1) |
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5.2.2 Developmental Changes (Ontogeny) of CYP2D6 Expression and Activity |
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316 | (1) |
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5.2.3 Pregnancy Induces CYP2D6 |
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317 | (1) |
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318 | (1) |
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5.3 Effects of Environmental Factors on CYP2D6 Activity |
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318 | (2) |
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318 | (1) |
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5.3.2 Alcoholic Cirrhosis |
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319 | (1) |
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319 | (1) |
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5.4 Human CYP2D6 Is Largely Uninducible by Prototypical Inducers of CYPs |
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320 | (1) |
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320 | (1) |
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320 | (1) |
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5.5 Transcriptional and Posttranscriptional Regulation of CYP2D6 by HNF-4α and FXR |
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321 | (2) |
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5.5.1 Transcriptional Regulation of CYP2D6 by HNF-4α |
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321 | (1) |
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5.5.2 Transcriptional Regulation of CYP2D6 by FXR |
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322 | (1) |
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5.6 Posttranslational Regulation of CYP2D6 |
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323 | (1) |
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5.7 Genome-Wide Association Studies on the Regulation of CYP2D6 |
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323 | (1) |
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5.8 Effects of Diseases on CYP2D6 Expression and Activity |
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324 | (3) |
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324 | (2) |
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5.8.2 Chronic Renal Failure |
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326 | (1) |
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326 | (1) |
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5.8.4 Rheumatoid Arthritis |
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327 | (1) |
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5.8.5 Cytokines and Inflammation |
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327 | (1) |
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5.9 Conclusions and Future Directions |
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327 | (1) |
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327 | (14) |
| Chapter 6 Structure and Function of Human CYP2D6 |
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341 | (74) |
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341 | (1) |
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6.2 Pharmacophore Models and Structural Requirements of CYP2D6 Ligands |
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341 | (2) |
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6.3 Homology Modeling Studies of Human CYP2D6 |
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343 | (3) |
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6.3.1 Homology Models Derived from Bacterial CYPs |
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343 | (1) |
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6.3.2 Homology Models Derived from Rabbit CYP2C5 Structures |
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344 | (2) |
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6.4 Site-Directed Mutagenesis Studies of CYP2D6 |
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346 | (12) |
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346 | (1) |
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346 | (1) |
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347 | (1) |
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347 | (1) |
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347 | (1) |
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6.4.6 Phe120, Phe481, and Phe483 |
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348 | (1) |
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349 | (1) |
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350 | (1) |
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350 | (1) |
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350 | (1) |
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350 | (3) |
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353 | (1) |
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353 | (1) |
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353 | (1) |
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353 | (1) |
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354 | (1) |
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355 | (1) |
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356 | (1) |
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356 | (1) |
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356 | (1) |
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356 | (1) |
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356 | (2) |
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6.5 Studies Using Aryldiazene Probes |
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358 | (1) |
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6.6 Antibody Studies of Human CYP2D6 |
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359 | (1) |
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6.7 Other Molecular Modeling Studies |
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360 | (1) |
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6.8 X-Ray Crystallographic Study of Human CYP2D6 and Functional Implications |
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360 | (7) |
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6.8.1 Secondary Structure of CYP2D6 in Comparison with CYP2C9 |
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360 | (1) |
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6.8.2 Active-Site Cavity of CYP2D6 |
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361 | (1) |
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6.8.3 Key Active-Site Amino Acids of CYP2D6 |
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362 | (2) |
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362 | (1) |
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6.8.3.2 Leu213 and Val308 |
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362 | (1) |
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362 | (1) |
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362 | (1) |
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363 | (1) |
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363 | (1) |
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6.8.3.7 Phe120, Phe481, and Phe483 |
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364 | (1) |
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364 | (1) |
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364 | (1) |
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6.8.5 Access and Egress Channels |
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364 | (1) |
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6.8.6 Binding Region for Cytochrome P450 Reductase |
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365 | (1) |
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6.8.7 Plasticity of CYP2D6 |
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365 | (1) |
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6.8.8 A Comparison of the Homology Model and Crystal Structure of CYP2D6 |
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366 | (1) |
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6.8.9 Binding of Atypical Substrates to Human CYP2D6 |
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366 | (1) |
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6.9 Bindings Modes of the Substrates and Inhibitors with CYP2D6 |
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367 | (40) |
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6.9.1 Binding Modes of the Substrates with CYP2D6 Active Site |
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368 | (7) |
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6.9.2 Binding Modes of the Inhibitor with the CYP2D6 Active Site |
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375 | (32) |
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6.10 Conclusions and Future Directions |
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407 | (1) |
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407 | (8) |
| Chapter 7 Clinical Pharamcogenomics of Human CYP2D6 |
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415 | (68) |
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415 | (1) |
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7.2 Interindividual Variability in CYP2D6 Expression and Activity |
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416 | (1) |
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7.3 Alleles of the CYP2D6 Gene |
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416 | (14) |
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7.3.1 Null Alleles of CYP2D6 |
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416 | (11) |
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7.3.1.1 Null Alleles Attributed to Single Base Mutation or Small Insertions/Deletions |
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425 | (1) |
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7.3.1.2 Nonfunctional Full-Length Coded Alleles |
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426 | (1) |
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7.3.1.3 Deletion of the Entire Gene |
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426 | (1) |
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7.3.1.4 Formation of Hybrid Genes |
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426 | (1) |
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7.3.2 Alleles with Partial or Residual Function |
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427 | (2) |
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7.3.3 Alleles with Largely Normal or Increased Activity |
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429 | (1) |
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7.3.4 Duplication and Multiduplication of CYP2D6 |
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429 | (1) |
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7.4 Ethnic Variation in the Distribution of CYP2D6 Polymorphisms |
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430 | (1) |
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431 | (1) |
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431 | (1) |
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431 | (5) |
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432 | (1) |
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433 | (1) |
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434 | (1) |
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435 | (1) |
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436 | (7) |
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7.7.1 Tricyclic Antidepressants |
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436 | (3) |
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7.7.1.1 Amitriptyline and Nortriptyline |
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436 | (1) |
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436 | (1) |
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437 | (1) |
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7.7.1.4 Imipramine and Desipramine |
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437 | (1) |
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438 | (1) |
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438 | (1) |
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7.7.2 Selective Serotonin Reuptake Inhibitors |
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439 | (3) |
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439 | (1) |
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439 | (1) |
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440 | (1) |
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441 | (1) |
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441 | (1) |
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7.7.3 Other Antidepressants |
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442 | (1) |
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442 | (1) |
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442 | (1) |
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442 | (1) |
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7.7.3.4 Miscellaneous Antidepressants |
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443 | (1) |
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443 | (6) |
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443 | (1) |
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444 | (1) |
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444 | (2) |
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446 | (1) |
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446 | (1) |
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447 | (1) |
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447 | (1) |
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7.8.8 Miscellaneous and Atypical Antipsychotics |
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448 | (1) |
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448 | (1) |
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448 | (1) |
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7.8.8.3 Miscellaneous Antipsychotics |
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448 | (1) |
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7.9 Centrally Acting Cholinesterase Inhibitors |
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449 | (1) |
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449 | (1) |
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449 | (1) |
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7.10 Drugs for the Treatment of Attention-Deficit/Hyperactivity Disorder |
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449 | (2) |
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449 | (2) |
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7.11 Drugs for the Treatment of Senile Dementia |
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451 | (1) |
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451 | (1) |
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7.12 Antimuscarinic Drugs |
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451 | (1) |
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451 | (1) |
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451 | (1) |
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451 | (1) |
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451 | (1) |
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451 | (1) |
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452 | (1) |
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452 | (1) |
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452 | (1) |
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452 | (1) |
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452 | (2) |
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452 | (1) |
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453 | (1) |
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454 | (1) |
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454 | (1) |
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454 | (4) |
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455 | (1) |
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455 | (1) |
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455 | (1) |
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456 | (1) |
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456 | (1) |
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457 | (1) |
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7.17 Oral Hypoglycemic Drugs |
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458 | (1) |
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458 | (1) |
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7.18 Selective Estrogen Receptor Modulators |
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459 | (1) |
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459 | (1) |
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460 | (1) |
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460 | (1) |
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460 | (1) |
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460 | (1) |
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|
460 | (1) |
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7.20 Conclusions and Future Perspectives |
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460 | (3) |
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463 | (20) |
| Chapter 8 General Discussion about Human CYP2D6 |
|
483 | (12) |
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|
489 | (6) |
| Index |
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495 | |