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E-raamat: Mass Spectrometry: Developmental Approaches to Answer Biological Questions

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The understanding of the events taking place in a cell, a biological fluid or in any biological system is the main goal of biology research. Many fields of research use different technology to assess those events. Mass spectrometry is one of those techniques and this undergoes constant evolution and adaptation to always enhance the accuracy of the information provided. Proteomics provides a large panel of data on protein identity and protein expression that were made possible by mass spectrometry. For several years now mass spectrometry has become central to performing proteomic research, however this powerful tool is under constant evolution to be more sensitive and more resolute. More importantly mass spectrometry became a field of research focusing on new applications. Indeed, the complexity in biological systems relies on the changes of expression of transcription of proteins but also on the post-translational modification of proteins, the structure of proteins and the interaction between proteins, amongst others. As of now, several investigations tried to improve the quantification of proteins by mass spectrometry, the determination of post-translational modifications, the protein-protein and protein-nucleic acids interaction or the proteins structures.

This book is structured as follows: after a brief introduction of the usual and most popular applications for mass spectrometry in proteomics, the most recent research and developments in mass spectrometry-based methodologies will be explored.

1 Introduction to Mass Spectrometry
1(8)
1.1 Introduction
1(8)
1.1.1 What Is Mass Spectrometry?
2(1)
1.1.2 The Evolution of the Mass Spectrometers
3(1)
1.1.3 The Evolution of the Interest for Mass Spectrometry Analysis
4(3)
References
7(2)
2 What are the Common Mass Spectrometry-Based Analyses Used in Biology?
9(24)
2.1 Protein Quantification
19(8)
2.1.1 Label Free Quantification
21(2)
2.1.2 Stable Isotope Labeling
23(4)
2.2 Amino Acids Analysis and Small Cell Component Analysis by Mass Spectrometry
27(1)
2.3 Lipid Analysis by Mass Spectrometry
28(1)
2.4 Mass Spectrometry of Nucleotides
29(4)
References
31(2)
3 What Information Mass Spectrometry Analyses of Tissues and Body Fluids Provide?
33(8)
3.1 Mass Spectrometry Imaging
34(3)
3.2 Biological Samples Analysis
37(1)
3.3 Summary
38(3)
References
38(3)
4 Can Mass Spectrometry Help Determine Proteins Structure and Interactions?
41(12)
4.1 Mass Spectrometry of Unmodified Proteins and Complexes
43(2)
4.2 Using the Interaction with the Solvent as Marker to Analyze Proteins and Complex Structures
45(2)
4.3 Cross-Linking and Chemical Measurement of Distances
47(3)
4.4 Concluding Remarks
50(3)
References
50(3)
5 What Interest Mass Spectrometry Provides in the Determination and Quantification of Post-Translational Modifications?
53(8)
5.1 Study of Phosphorylation
54(2)
5.2 Study of Glycosylation
56(2)
5.3 Studying Post-Translational Modifications
58(3)
Reference
58(3)
6 How to Determine Protein Function by Mass Spectrometry?
61(4)
6.1 Analyzing Enzymatic Activity Using Mass Spectrometry
62(1)
6.2 Characterizing Interaction Constants by Mass Spectrometry
62(1)
6.3 Concluding Remarks
63(2)
References
64(1)
7 Computer-Assisted Data Processing, Analysis and Mining for New Applications
65
7.1 Protein Identification and Protein Quantification
66(1)
7.2 Direct Analysis of Tissues and Body Fluids
67(1)
7.3 Protein Structure and Protein Interaction Determined by Mass Spectrometry
68(1)
7.4 Computer-Assisted Analysis of Post-Translational Modifications
69(1)
7.5 Concluding Remarks
69
References
69
Dr Gwënaël Pottiez holds a Ph.D in Biochemistry. His recent experience is working with Professor Greenfield at Oxford University. Dr Pottiez research includes the structure of the anatomical barrier separating the brain tissue from the blood stream which is a significant knowledge asset in neuroscience drug development. His post-doctoral project of research was based on the discovery of biomarkers in relation to viral infection, analyzing patient's blood. This provided him knowledge on clinical research and biomarker discovery related to human pathologies. His skills set include chemistry of proteins, pharmacology, mass spectrometry and software.