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E-raamat: Microarray Innovations: Technology and Experimentation

Edited by (University of California at San Diego, Ja Jolla, USA)
  • Formaat: 314 pages
  • Ilmumisaeg: 02-Apr-2009
  • Kirjastus: CRC Press Inc
  • Keel: eng
  • ISBN-13: 9781420094510
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  • Formaat: 314 pages
  • Ilmumisaeg: 02-Apr-2009
  • Kirjastus: CRC Press Inc
  • Keel: eng
  • ISBN-13: 9781420094510

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In recent years, high-density DNA microarrays have revolutionized biomedical research and drug discovery efforts by the pharmaceutical industry. Their efficacy in identifying and prioritizing drug targets based on their ability to confirm a large number of gene expression measurements in parallel has become a key element in drug discovery. Microarray Innovations: Technology and Experimentation examines the incredibly powerful nature of array technology and the ways in which it can be applied to understanding the genomic basis of disease.





Explores a myriad of applications in use today





This volume explores recent innovations in the microarray field and tracks the evolution of the major platforms currently used. The international panel of contributors presents a survey of the past five years research and advancements in microarray methods and applications and their usage in drug discovery and biomedical research. The contributions discuss improvements in automation (array fabrication and hybridization), new substrates for printing arrays, platform comparisons and contrasts, experimental design, and data normalization and mining schemes. They also review epigenomic array studies, electronic microarrays, comparative genomic hybridization, microRNA arrays, and mutational analyzes. In addition, the book provides coverage of important clinical diagnostic arrays, protein arrays, and neuroscience applications.





Examines improved methodologies





As microarrays have evolved steadily over time from archetypical in-house complementary DNA (cDNA) arrays to robust commercial oligonucleotide platforms, there has been a migration to higher density biochips with increasing content and better analytical methodologies. This compendium summarizes the vast advances that have been made in this technology, highlighting the supreme advantages of microarray-based appro
Preface vii
Acknowledgments ix
Editor xi
Contributors xiii
Summary of
Chapters
xvii
Introduction to Gene Expression Profiling with DNA Microarray Technology
1(10)
Michael D. Kane
Introduction to Large-Scale Gene Expression Data Analysis
11(14)
Anbarasu Lourdusamy
Massimo Ubaldi
Laura Soverchia
Gary Hardiman
Roberto Ciccocioppo
The Statistical Design and Analysis of Gene Expression Data
25(8)
Sonia Jain
Laboratory Automation for Microarray Experimentation
33(8)
Douglas N. Gurevitch
How to Evaluate a Microarray Scanner
41(12)
Yaping Zong
Shanshan Zhang
Youxiang Wang
Yaxian Shi
The Role of Substrates in Microarray Experimentation and How to Choose the Correct Coating for Microarraying
53(18)
Ruediger Dietrich
Daniel Haines
Rajendra Redkar
Alistair Rees
Toward Highly Efficient Automated Hybridizations
71(16)
Kris Pappaert
Johan Vanderhoeven
Gert Desmet
Paul Van Hummelen
Characterization of Microarray Hybridization Stoichiometry
87(10)
Richard J.D. Rouse
Gary Hardiman
Data Normalization Selection
97(22)
Phillip Stafford
Methods for Assessing Microarray Performance
119(8)
Steffen G. Oeser
Shawn C. Baker
Eugene Chudin
Kenneth Kuhn
Timothy K. McDaniel
Comparison of Different Normalization Methods for Applied Biosystems Expression Array System
127(18)
Catalin Barbacioru
Yulei Wang
Roger Canales
Yongming Sun
David Keys
Frances Chan
Kathryn Hunkapiller
Karen Poulter
Raymond R. Samaha
A Systematic Comparison of Gene Expression Measurements across Different Hybridization-Based Technologies
145(30)
Winston Patrick Kuo
Fang Liu
Tor-Kristian Jensen
Shari L. Benson
Connie L. Cepko
Eivind Hovig
Lucila Ohno-Machado
DNA Methylation Arrays: Methods and Analysis
175(32)
Natalie P. Thorne
John Carlo Marioni
Vardhman K. Rakyan
Ashraf E.K. Ibrahim
Charles E. Massie
C. Curtis
James D. Brenton
Adele Murrell
Simon Tavare
Electronic Microarrays: Progress toward DNA Diagnostics
207(18)
Howard Reese
Dan Smolko
Paul Swanson
Dalibor Hodko
New Applications for Microarrays
225(18)
Mark Andersen
Steve Warrick
Christopher Adams
Development of an Oligonucleotide Microarray for Mutational Analysis Using Single or Multiple Sample Hybridization
243(16)
Il-Jin Kim
Hio Chung Kang
Jae-Gahb Park
Development of an Integrated Molecular Diagnostic Test to Identify Respiratory Viruses
259(12)
Frederic Raymond
Whei-Kuo Wu
Jacques Corbeil
Microarrays in Neuroscience
271(18)
Massimo Ubaldi
Wolfgang Sommer
Laura Soverchia
Anbarasu Lourdusamy
Barbara Ruggeri
Roberto Ciccocioppo
Gary Hardiman
Optimization of Protein Array Fabrication for Establishing High-Throughput Ultra-Sensitive Microarray Assays for Cancer Research
289(12)
Gary Hardiman
C. Ramana Bhasker
Richard J.D. Rouse
Index 301
Gary Hardiman