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E-raamat: Microbial Syntrophy-mediated Eco-enterprising

Edited by (Department of Biotechnology, Panjab University, Chandigarh, India), Edited by (Division of Life Sciences, Institute of Advanced Study in Science and Technology, Guwahati), Edited by (Chief Scientist and Head, R&D, Azoth Biotech Pvt. Ltd., Noida, UP, India), Edited by
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Microbial Syntrophy-Mediated Eco-enterprising summarizes and reviews possible microbial applications for eco-industrial sustainability. The book emphasizes a wide spectrum of experimental and theoretical contributions from eminent researchers in the field. In 13 chapters, there is a focus on the microbial intrusions for remediating sites by accumulated pesticides, heavy metals, polyaromatic hydrocarbons, and other industrial effluents. Moreover, the potentiality and key mechanisms used by microorganisms for sustainable environmental management and their prospects are also considered in this new release.

The term syntrophy for nutritional interdependence is often used in microbiology to describe the symbiotic relationship between bacterial species. Understanding such interactions can be of considerable interest when we come to manipulate microbes to our own benefit, such as by disrupting pathogenic communities with antibiotics or by promoting efficiency in communities that produce energy or break down waste.

  • Summarizes and reviews possible microbial applications for eco-industrial sustainability
  • Includes a wide spectrum of experimental and theoretical contributions from eminent researchers in the field
  • Focuses on microbial intrusions for remediating sites and other industrial effluents
Contributors xi
About the editors xv
Chapter 1 Anabaena-azollae, significance and agriculture application: A case study for symbiotic cyanobacterium 1(14)
Azza A.M. Abd El-Aal
1 Introduction
1(2)
2 Anabaena azollae description isolated from Azolla pinnata
3(2)
3 Use of Anabaena azollae in the farming sector
5(5)
3.1 Professional biostimulation on plant growth
5(1)
3.2 Anabaena azollae as biofertilizer
6(1)
3.3 Anabaena azollae biological control
7(3)
4 Anabaena azollae bioremediation
10(1)
5 Conclusion
11(1)
Acknowledgments
12(1)
References
12(3)
Chapter 2 The bioremediation of agricultural soils polluted with pesticides 15(26)
S.K. Jayasekara
R.R. Ratnayake
1 Introduction
15(1)
2 An overview of pesticides; their role in agriculture and the adverse impacts associated with the over-use
16(2)
2.1 Overview of pesticides and their roles in agriculture
16(1)
2.2 Adverse impacts of pesticides over-use in agriculture
17(1)
3 Conventional methods of remediating agricultural soils polluted with pesticides
18(1)
4 Bioremediation of agricultural soils polluted with pesticides
18(9)
4.1 Microbial bioremediation of agricultural soils contaminated with pesticides
19(3)
4.2 Factors affecting the microbial bioremediation
22(5)
5 Research on bioremediation of agricultural soils polluted with pesticides
27(4)
5.1 Current areas of research on microbial bioremediation
27(1)
5.2 Novel trends in microbial bioremediation technology
28(2)
5.3 Advantages and disadvantages of microbial bioremediation process
30(1)
5.4 Indications for future research
30(1)
6 Conclusion
31(1)
References
32(9)
Chapter 3 Multifunctional properties of polysaccharides produced by halophilic bacteria and their new applications in biotechnology 41(30)
Hitarth B. Bhatt
Dhritiksha M. Baria
Vikram H. Ravel
Satya P. Singh
1 Introduction
41(1)
2 Eco-physiological role
42(2)
3 EPS producing halophilic bacteria
44(1)
4 Production and fermentation strategies of EPS
45(2)
5 Extraction and purification of EPS
47(1)
6 Quantification and characterization of the EPSs
47(2)
7 Chemical composition of EPS
49(3)
8 Structure-function relationship
52(1)
9 Improved EPS with the modified properties: Engineering strategies
53(1)
10 Multifunctional properties of EPS
54(5)
10.1 Cryoprotection
54(1)
10.2 Facilitates biochemical interactions
54(1)
10.3 Temperature stability
55(1)
10.4 Emulsifying property
55(1)
10.5 Biofilm formation
55(1)
10.6 Salt tolerance
55(1)
10.7 Drought protection
56(1)
10.8 Protection against antimicrobials
56(1)
10.9 Nutrient trap
56(1)
10.10 Applications of EPS from halophiles
57(2)
11 Conclusion
59(1)
Acknowledgments
59(1)
References
59(12)
Chapter 4 Microorganisms in metal recovery-Tools or teachers? 71(16)
Jana Sedlakova-Kadukova
1 Introduction
71(1)
2 Microorganisms as key-players in biogeochemical cycling
72(2)
3 Metabolism in metal recovery
74(2)
4 Microbial applications in metal recovery
76(6)
4.1 Processes connected with nutrient metabolism
76(2)
4.2 Processes connected with energetic metabolism
78(2)
4.3 Detoxication processes
80(2)
5 Conclusion
82(1)
References
82(5)
Chapter 5 Endophytic microbes mitigate biotic-abiotic stresses and modulate secondary metabolite pathway in plants 87(38)
Sucheta Singh
Suman Singh
Akanksha Singh
Alok Kalra
1 Introduction
87(2)
2 Plant endophytes symbiosis and their impact on plant phytochemical changes during biotic and abiotic stresses
89(10)
2.1 Stress in plants
89(1)
2.2 Tactics adapted to mitigate environmental stress in plants
89(1)
2.3 Role of endophytes in reducing abiotic stresses in plants
90(4)
2.4 Mode of action of endophytes in plants under abiotic stress
94(1)
2.5 Role of endophytes in reducing biotic stress in plants
95(4)
2.6 Mode of action of endophytes in plants under biotic stress
99(1)
3 Plant-endophytes interactions under changing climate
99(4)
4 Endophytes modulates plant secondary metabolites biosynthesis
103(2)
5 Commercialization of endophytes
105(4)
5.1 Carrier-based formulations
106(1)
5.2 Stability and shelf life study
107(1)
5.3 Single vs multiple strains formulation
107(1)
5.4 Patent and registration
108(1)
5.5 Policies to support commercialization
108(1)
6 Conclusion and perspectives
109(1)
Acknowledgments
109(1)
References
110(15)
Chapter 6 Biotechnological approaches for upgrading of unconventional crude oil 125(52)
Wael A. Ismail
Abdul Salam Abdul Raheem
Dawoud Bahzad
1 Introduction
125(1)
2 Unconventional crude oil resources
126(3)
3 Characteristics of unconventional crude oils
129(2)
4 Problems associated with the production and processing of unconventional crudes
131(1)
5 Recovery and processing of unconventional crude oils
132(1)
6 Bioupgrading of heavy crude oils
133(29)
6.1 Biodegradation and biotransformation of asphaltenes
135(7)
6.2 Sulfur removal and bioupgrading of unconventional crude oils
142(7)
6.3 Hydrocarbon biodegradation pathways
149(13)
7 Conclusions and research needs
162(1)
References
163(14)
Chapter 7 Microbial approaches for amino acids production 177(32)
Ani M. Paloyan
Lusine H. Melkonyan
Gayane Ye. Avetisova
1 Introduction
177(2)
2 Amino acids production by the fermentative way
179(9)
2.1 Approaches to amino acids-producing strains improvements
179(1)
2.2 L-tryptophan production
180(3)
2.3 L-valine production
183(3)
2.4 L-alanine production
186(2)
3 Amino acids production by the enzymatic way
188(11)
3.1 L- and D-amino acids production: Aminoacylases
188(5)
3.2 L- and D-amino acids production: Hydantoinase-carbamoilase
193(6)
4 Conclusion
199(1)
References
200(9)
Chapter 8 Pseudomonas for sustainable agricultural ecosystem 209(16)
Pooja Misra
Archana
Shikha Uniyal
Atul Kumar Srivastava
1 Introduction
209(1)
2 Methods of sustainable agriculture
210(1)
3 Plant growth-promoting rhizobacteria
211(1)
4 Biosynthesis of Pseudomonas
212(1)
5 Bioremediation activity
212(1)
6 How Pseudomonas directly benefitted agriculture
213(1)
7 Plant growth-promoting activity of Pseudomonas
214(3)
8 Bioremediation by pseudomonas
217(1)
9 Advantages of sustainable agriculture
217(1)
10 Drawbacks of sustainable agriculture
218(1)
11 Conclusion
218(1)
References
218(7)
Chapter 9 Relationship between organic matter and microbial biomass in different vegetation types 225(22)
Emre Babur
Turgay Dindaroalu
Rana Roy
Mahmoud F. Seleiman
Ekrem Ozlu
Martin L. Battaglia
Omer Suha Uslu
1 Introduction
226(1)
2 Factors affecting soil microbial properties
227(5)
3 Effects of vegetation types, species, and afforestation
232(2)
4 Effects of land-use on soil organic carbon and microbial biomass
234(2)
5 Importance of organic litter layer
236(3)
6 Conclusion
239(1)
References
240(7)
Chapter 10 Mechanisms of stress adaptation by bacterial communities 247(12)
Saurabh Pandey
Raunak
Takshashila Tripathi
Masuma Khawary
Deeksha Tripathi
Sashi Kant
1 Introduction
248(1)
2 Stress, adaptation to stress and survival
248(1)
3 Abiotic factors
248(3)
4 Biotic stress factors
251(1)
5 Single-cell vs community (biofilm) behavior and advantages
251(2)
6 Bacterial mechanisms for sensing its population (quorum) and effect of stress
253(1)
7 Odd man in the population: The persisters
254(1)
References
255(4)
Chapter 11 Synergism in microbial communities facilitate the biodegradation of pesticides 259(16)
Yingjie Yang
Qianru Chen
Naila Ilyas
Ping Zou
Changliang Jing
Bin Li
Yiqiang Li
1 Introduction
259(1)
2 Mechanisms of pesticide biodegradation pathways in microbes
260(8)
2.1 Organophosphorus pesticide
260(3)
2.2 Organochlorine pesticides
263(2)
2.3 Atrazine pesticides
265(2)
2.4 Pyrethroid pesticides
267(1)
3 Conclusion and future perspectives
268(1)
References
269(6)
Chapter 12 Bioproduction of terpenoid aroma compounds by microbial cell factories 275(16)
Laura Drummond
1 Introduction
275(1)
2 Biosynthesis
276(1)
3 Microbial production
277(2)
4 MVA and MEP pathway engineering
279(2)
5 Engineering terpene synthases and prenyl transferases
281(2)
6 Central carbon metabolism
283(1)
7 Toxicity
284(1)
8 Conclusion
285(1)
References
286(5)
Chapter 13 Microbial mediated remediation of pesticides: A sustainable tool 291(14)
Mohit Mishra
Siddharth Shankar Bhatt
Mian Nabeel Anwar
1 Introduction
291(3)
2 Bioremediation technology of pesticide-contaminated soil
294(2)
3 Metabolic pathways of microbial degradation of pesticides
296(1)
4 Influencing factors of microbial remediation of pesticide
296(1)
5 Plant rhizosphere microdomains are an important place to degrade organic pollutants
297(1)
6 Enzymes released from roots can catalyze the degradation of organic pollutants
297(1)
7 Pesticide degradation via microbial associated plant rhizosphere
298(1)
8 Several issues that need further study in bioremediation
299(1)
References
300(5)
Chapter 14 Applying enzymatic biomarkers of the in situ microbial community to assess the risk of coastal sediment 305(32)
Elisamara Sabadini-Santos
Vanessa de Almeida Moreira
Angelo Cezar Borges de Carvalho
Juliana Ribeiro Nascimento
Jose V. Lopez
Luiz Francisco Fontana
Ana Elisa Fonseca Silveira
Edison Dausacker Bidone
1 Introduction
306(1)
2 Sediment dredging in coastal systems and study areas
307(4)
2.1 Guanabara Bay
308(2)
2.2 Sepetiba Bay
310(1)
3 Sediment dredging legislation: In situ microbial bioindicators/biomarkers replacing bioassays and toxicity tests ex situ
311(3)
4 Quality ratio (QR) index
314(2)
5 Case studies of the quality ratio index
316(5)
5.1 Metal sediment contamination in GB and SB bays
316(1)
5.2 Geochemical parameter behavior-GT-In GB and SB sediments
317(3)
5.3 Microbial parameter behavior and their integration with GT in GB and SB sediments
320(1)
6 Quality ratio performance assessment: Taxonomic approach
321(6)
7 Conclusion
327(1)
Acknowledgments
328(1)
References
328(9)
Index 337
Dr. Raghvendra Pratap Singh is an eminent scientist in the Microbial Biotechnology. He has received his PhD from Gurukul Kangri University, India and is presently working in Research and Development Division, Uttaranchal University, Dehradun. Since 2014-2016, He worked as Research Scientist in Shandong University. His research contributions relate to the area of ecology of myxobacteria, plant-microbes interaction and microbial genomics. He is member of Aquatic Biodiversity Society and has a certification from Food and Drug association of India. He has received several awards and grants from various scientific agencies and societies such as Young Scientist award by ABA-2017, SERB-DST grant, Chinese Postdoctoral Grant, DBT travel grant etc. He has participated as Speaker in several National and International scientific meets and conferences such as FEMS-2013 in Stresa, Italy, Myxo-2016 in Switzerland, AMI, PTPB-2014 etc. Dr. Geetanjali Manchanda is working as Head of the Botany Department in DAV University, Jalandhar, India. She received MSc degree from Delhi University and PhD from Panjab University, Chandigarh. She has extensively worked on plant microbe interactions in stressed and contaminated environments with special focus on mycorrhizae for the fortification of various crops. She has received the prestigious research grants from DST, India, and IFS Sweden. She has contributed immensely to the scientific community by publishing research papers and book chapters. She had recently authored three books in which one book is on the use of omics technology for microbiology that has been published by ICAR, New Delhi, India. Dr Kaushik Bhattacharjee is a scientist in the field of Microbiology in the Division of Life Sciences, Institute of Advanced Study in Science and Technology, Guwahati, India. Dr Kaushik Bhattacharjee received his PhD in microbiology from the North-Eastern Hill University of India, by conducting research into the inter-disciplinary field of microbial diversity in extreme environments, pharmaceutical microbiology, and medicinal chemistry. His post-doctoral training was at the Department of Botany, North-Eastern Hill University of India and at IASST, Guwahati, India. He has so far contributed over 20 publications in journals of high repute and has published about six book chapters. He also serves as an editorial board member and invited journal reviewer for many highly reputed journals with publishing groups, such as Springer Nature, Elsevier, PLoS, Taylor & Francis. He was presented with the Outstanding Reviewer Award from Elsevier for the year 2018. He also serves as a certified mentor at Publons Academy, Clarivate Analytics, USA. His broad area of research interests includes, environmental microbiology, and pharmaceutical microbiology. Professor Hovik Panosyan graduated in Biology from Yerevan State University (YSU) in 1999. He received his PhD in microbiology from Institute of Botany of NAS of Armenia in 2003. He has been a faculty member at YSU since 2002 and was promoted to Associate Professor in 2011. His main research area is Microbial Ecology and Biology of Extremophilic Microbes. He has been awarded numerous research fellowships and awards including FEBS Short-Term Fellowship (2009 and 2004), FEMS Research Fellowship (2009), NFSAT (2011) DAAD (2013) and has participated in international research together with USA, European and Asian partners. Dr. Panosyan is actively engaged in studying of microbial community of extreme environments (terrestrial geothermal springs, alkali-saline soils, subterranean salt deposits, copper and molybdenum mines distributed on the territory of Armenia) based on culture-dependent and molecular techniques. He has published more than 60 research papers in peer-reviewed journals, 4 books and 25 chapters.