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E-raamat: Next Steps for Functional Genomics: Proceedings of a Workshop

  • Formaat: 200 pages
  • Ilmumisaeg: 18-Nov-2020
  • Kirjastus: National Academies Press
  • Keel: eng
  • ISBN-13: 9780309676762
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  • Formaat: 200 pages
  • Ilmumisaeg: 18-Nov-2020
  • Kirjastus: National Academies Press
  • Keel: eng
  • ISBN-13: 9780309676762

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One of the holy grails in biology is the ability to predict functional characteristics from an organism's genetic sequence. Despite decades of research since the first sequencing of an organism in 1995, scientists still do not understand exactly how the information in genes is converted into an organism's phenotype, its physical characteristics. Functional genomics attempts to make use of the vast wealth of data from "-omics" screens and projects to describe gene and protein functions and interactions. A February 2020 workshop was held to determine research needs to advance the field of functional genomics over the next 10-20 years. Speakers and participants discussed goals, strategies, and technical needs to allow functional genomics to contribute to the advancement of basic knowledge and its applications that would benefit society. This publication summarizes the presentations and discussions from the workshop.

Table of Contents



Front Matter 1 Introduction 2 The GenotypePhenotype Challenge 3 Case Studies on Building Functional Genomics Tools in Diverse Systems 4 Understanding the Contributions of Non-Protein-Coding DNA to Phenotype 5 Advancing Research on the Environmental Regulation of Gene Function 6 Predicting Current and Future Sources of Variation in Quantitative Traits 7 Interpreting and Validating Results from High-Throughput Screening Approaches 8 Large Databases and Consortia 9 Big-Picture Challenges in Research, Education, and Training 10 Future of Functional Genomics References Appendix A: Statement of Task Appendix B: Workshop Agenda Appendix C: Planning Committee Biographies Appendix D: Speaker Biographies Appendix E: Acronyms and Abbreviations
1 Introduction
1(4)
Importance of Functional Genomics
2(1)
Workshop Outline and Objectives
3(2)
2 The Genotype-Phenotype Challenge
5(12)
Overview of the Challenge
5(2)
Cells
7(1)
Programs
8(5)
Mechanisms
13(3)
Concluding Remarks and Summary
16(1)
3 Case Studies On Building Functional Genomics Tools In Diverse Systems
17(22)
Understanding the Genotype-Phenotype Connection in Monkeyflowers
18(3)
Microbial Communities and Their Interactions on Cheese Rinds
21(4)
Neurogenetics of Sociality and Relationships
25(4)
Genetic Interrogation of Diverse Plants
29(3)
Low-Cost, High-Resolution Chromatin Profiling
32(3)
Discussion
35(4)
4 Understanding The Contributions Of Non-Protein-Coding DNA To Phenotype
39(14)
Functional Genomics of Adaptation in Sticklebacks
40(3)
Phylogenetics of Flightless Birds
43(3)
Role of Chromatin Folding in Gene Expression
46(2)
Discussion
48(5)
5 Advancing Research On The Environmental Regulation Of Gene Function
53(22)
Factors Shaping Variation in Social Behavior
54(5)
How Environmental Factors Influence a Complex Phenotype
59(3)
Environmental Regulation of Gene Function in Agriculture
62(3)
Environmental Factors Affecting Quantitative Traits in
Drosophila
65(7)
Discussion
72(3)
6 Predicting Current And Future Sources Of Variation In Quantitative Traits
75(12)
Discovering the Genetic Basis of a Change: An Example
76(5)
Exploring the Regulation of Gene Expression
81(4)
Conclusions and Next Steps
85(2)
7 Interpreting And Validating Results From High-Throughput Screening Approaches
87(18)
Lessons on Design and Validation from a CRISPR Loss-of-Function Screen on KRAS-Mutant Cancers
87(3)
Using Functional Genomics to Understand Development
90(4)
Validating Results from High-Throughput Enhancer Screens
94(4)
Harnessing Genetic Diversity to Understand Maintenance of Pluripotency in Embryonic Stem Cells
98(5)
Discussion
103(2)
8 Large Databases And Consortia
105(22)
ChRO-seq: A New Technique for Interpreting Genome Sequence
105(4)
Using Gene Expression to Understand the Genetics of Disease
109(2)
An Atlas of Atlases
111(4)
A Cloud-Based Platform for Genomics Data Mining
115(3)
Supporting Development of Methods and Tools
118(2)
Discussion
120(2)
Importance of Consortia and Large Databases
122(5)
9 Big-Picture Challenges In Research, Education, And Training
127(18)
Education and Training
127(5)
Determining and Defining "Model" Systems
132(4)
Societal and Ethical Implications of Functional Genomics Research
136(5)
Discussion
141(4)
10 Future Of Functional Genomics
145(18)
Breakout Group Discussions on the Future of Functional Genomics
145(4)
Comments from the Town Hall Discussion
149(2)
Closing Remarks and Final Overview
151(2)
References
153(10)
APPENDIXES
A Statement Of Task
163(2)
B Workshop Agenda
165(6)
C Planning Committee Biographies
171(4)
D Speaker Biographies
175(10)
E Acronyms And Abbreviations
185