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E-raamat: Optical Probes in Biology

Edited by (EMBL, Heidelberg, Germany), Edited by (Department of Pharmacology and Molecular Sciences, The Johns Hopkins School of Medicine, Baltimore, Maryland, USA), Edited by (John Hopkins University, Baltimore, Maryland, USA)
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Optical probes, particularly the fluorescent varieties, enable researchers to observe cellular events in real time and with great spatial resolution. Optical Probes in Biology explores the diverse capabilities of these powerful and versatile tools and presents various approaches used to design, develop, and implement them.

The book examines the use of optical probes to detect and track numerous molecular processes in living cells, including GTPase and kinase activities, membrane lipids, voltage, metal ions, metabolic signals, RNA, and histone modifications. It critically reviews the different probe designs and delves into the strategies for developing new fluorescent protein varieties with enhanced capabilities. It also covers sophisticated imaging techniques and equipment, such as intensity and lifetime-based fluorescence microscopy methods, used to visualize and track optical probes.

In addition, the book goes beyond live-cell tracking to discuss the growing application of activity-based probes for performing pharmacological drug screening and probing molecular processes in living animals. It also discusses emerging techniques that are expanding optical probe-based approaches into new biological frontiers.

With contributions from top international scientists, this book offers a thorough overview of the latest optical probes in cell biology and biochemistry. Both newcomers and established researchers will discover how to incorporate state-of-the-art optical probes and fluorescence imaging into their research.

Arvustused

" the editors of Optical Probes in Biology have successfully gathered the finest molecular tool crafters in this research field to provide readers with a comprehensive view of state-of-the-art developments and applications of optical probes. Additionally, the practical information discussed makes this book an invaluable reference guide to the scientific community to improve the process of proper probe selection. I highly recommend this book to every scientist considering employing optical probes to facilitate their investigations." Microscopy & Microanalysis, 2015

"Among the wide range of techniques elucidated in this book are GTPase and kinase activities, membrane lipids, metal ions, metabolic signals and histone modifications. Relevant chapters are written by experts in their fields who collectively provide readers with the means for bringing state-of-the art optical probe technques into their research."

--K. Alan Shore, Bangor University, U.K.

Series Preface ix
Preface xiii
Editors xvii
Contributors xix
SECTION I Introduction and Basics
1 Engineering of Optimized Fluorescent Proteins: An Overview from a Cyan and FRET Perspective
3(30)
Lindsay Haarbosch
Joachim Goedhart
Mark A. Hink
Laura van Weeren
Daphne S. Bindels
Theodorus W.J. Gadella
2 Fluorescent Imaging Techniques: FRET and Complementary Methods
33(40)
Stefan Terjung
Yury Belyaev
SECTION II Tracking: Sensors for Tracking Biomolecules
3 Protein-Based Calcium Sensors
73(16)
Thomas Thestrup
Oliver Griesbeck
4 Monitoring Membrane Lipids with Protein Domains Expressed in Living Cells
89(48)
Peter Varnai
Tamas Balla
5 Biosensors of Small GTPase Proteins for Use in Living Cells and Animals
137(30)
Ellen C. O'Shaughnessy
Jason J. Yi
Klaus M. Hahn
6 Molecular Beacon-Type RNA Imaging
167(32)
Felix Hovelmann
Oliver Seitz
7 Optical Probes for Metabolic Signals
199(30)
Yin Pun Hung
Gary Yellen
8 Genetically Encoded Voltage Indicators
229(18)
Hiroki Mutoh
Walther Akemann
Thomas Knopfel
9 Prototypical Kinase Sensor Design Motifs for In Vitro and In Viuo Imaging
247(20)
Gary C. H. Mo
Ambhighainath Ganesan
Jin Zhang
10 RMA
267(24)
Samie R. Jaffrey
11 Fluorescent Sensors for Imaging Zinc Dynamics in Biological Fluids
291(26)
Wen-Hong Li
12 Histone Modification Sensors in Living Cells
317(18)
Hiroshi Kimura
Yuko Sato
SECTION III Beyond Live-Cell Tracking: Sensors for Diverse Applications
13 Chemical Probes for Fluorescence Imaging in Living Mice
335(20)
Toshiyuki Kowada
Hiroki Maeda
Kazuya Kikuchi
14 Optical Probes for In Vivo Brain Imaging
355(22)
Ksenia V. Kastanenka
Michal Arbel-Ornath
Eloise Hudry
Elena Galea
Hong Xie
Brian J. Bacskai
15 Smart Imaging Probes for the Study of Protease Function
377(36)
Ehud Segal
Matthew Bogyo
SECTION IV Emerging Techniques
16 Super-Resolution Imaging
413(22)
Robert K. Neely
Wim Vandenberg
Peter Dedecker
17 Imaging in Optogenetics
435(22)
Xiaobo Wang
Li He
Carol A. Vandenberg
Denise Montell
Index 457
Dr. Jin Zhang is a professor of pharmacology, neuroscience, and oncology in the Johns Hopkins University School of Medicine with a joint appointment in the Department of Chemical and Biomolecular Engineering in the Johns Hopkins University Whiting School of Engineering. She has received the American Heart Association National Scientist Development Award, the Biophysical Society Margaret Oakley Dayhoff Award, the National Institutes of Health Directors Pioneer Award, the American Society for Pharmacology and Experimental Therapeutics John J. Abel Award in Pharmacology, and the American Chemical Society Pfizer Award in Enzyme Chemistry. She was elected a fellow of the American Association for the Advancement of Science (AAAS) in 2014.

Dr. Sohum Mehta is a postdoctoral fellow at the Johns Hopkins University School of Medicine, where he is using genetically encoded biosensors to investigate the spatiotemporal mechanisms of calcineurin in living cells and developing novel genetically encoded tools to study intracellular signaling.

Dr. Carsten Schultz is a senior scientist at the European Molecular Biology Laboratory in Heidelberg, Germany. He is a member of the German Center for Lung Research. His research focuses on the manipulation and visualization of intracellular signaling networks, with a strong emphasis on lipid and membrane signaling as well as the use of optical probes in translational research. He has received the Heidelberg Molecular Life Science Award and the MRN Innovation Award.