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E-raamat: Phytomicrobiome Interactions and Sustainable Agriculture

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  • ISBN-13: 9781119644828
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  • Formaat: EPUB+DRM
  • Ilmumisaeg: 12-Jan-2021
  • Kirjastus: Wiley-Blackwell
  • Keel: eng
  • ISBN-13: 9781119644828
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"Recent research in plant sciences have proved that many of the mechanisms cannot be understood while ignoring the surrounding microbial communities. Plants are challenged due to their sessile life and lack of locomotion which makes them prone to variousunavoidable stress conditions. Various plant-microbe interactions result in the formation of plant microbiome and help plants tackle abiotic and biotic stresses. Plant-microbe interactions play a crucial role in plant growth and metabolism. Plants adapt to their terrestrial environment with the help of various microbial communities involved in nutrient acquisition and abatement of various biotic and abiotic factors induced stress conditions. Plants utilize sunlight for photosynthetic reduction of carbon and it acts as energy entry point due to which plant associated microbes have access to both via different ecological associations. Recently it has been found that various beneficial microbes help in plant development, starting from the seed germination to flowering and fruiting. Previously plant-microbe interactions were more or less confined to the investigations of root associated microbes, primarily in the "Rhizosphere". However, the microbial community associated with the shoot system of plants has also been found to play a beneficial role in the plant defense and its development. Many of the leaf associated microbes are found to be having an important role in imparting defense against various plant pathogens and abiotic stress conditions by affecting the plant activities. Thus, this gave rise to the concept of plant development along with its microbial community which is collectively known as "Phytomicrobiome" and helps the plant in all phases of life. The concept of Phytomicrobiomeis is revolutionizing plant science investigations and helping in the exploration of plant development and defence responses in cutting edge ways. This emerging area will help in increasing the sustainable production of agricultural crops, and better management of plant diseases, therefore, there is an urgent need to spread awareness about the concepts, current challenges and recent developments in the field of phytomicrobiome research and its application in sustainable agriculture"--

A guide to the role microbes play in the enhanced production and productivity of agriculture to feed our growing population

Phytomicrobiome Interactions and Sustainable Agriculture offers an essential guide to the importance of ‘Phytomicrobiome’ and explores its various components. The authors – noted experts on the topic – explore the key benefits of plant development such as nutrient availability, amelioration of stress and defense to plant disease. Throughout the book, the authors introduce and classify the corresponding Phytomicrobiome components and then present a detailed discussion related to its effect on plant development: controlling factors of this biome, its behaviour under the prevailing climate change condition and beneficial effects.

The book covers the newly emerging technical concept of Phytomicrobiome engineering, which is an advanced concept to sustain agricultural productivity in recent climatic scenario. The text is filled with comprehensive, cutting edge data, making it possible to access this ever-growing wealth of information. This important book:

  • Offers a one-stop resource on phytomicrobiome concepts
  • Provides a better understanding of the topic and how it can be employed for understanding plant development
  • Contains a guide to sustaining agriculture using phytomicrobiome engineering
  • Presents information that can lead to enhanced production and productivity to feed our growing population

Written for students, researchers and policy makers of plant biology, Phytomicrobiome Interactions and Sustainable Agriculture offers a clear understanding of the importance of microbes in overall plant growth and development.

List of Contributors xii
Preface xvi
About the Editors xviii
1 Plant Root Exudate Analysis: Recent Advances and Applications 1(14)
Shulbhi Verma
Amit Verma
1.1 Introduction
1(2)
1.2 Root Exudates Composition: Collection and Analysis
3(2)
1.3 Role of Root Exudates in Shaping Rhizospheric Microbiomes
5(1)
1.4 Applications of Root Exudation
6(1)
1.5 Conclusion and Future Prospects
7(3)
References
10(5)
2 Phytoproteomics: A New Approach to Decipher Phytomicrobiome Relationships 15(17)
Prachie Sharma
Kapila Kumar
2.1 Introduction
15(1)
2.2 Phytomicrobiome
16(2)
2.3 Phytomicrobiome: The Communication via Signaling
18(1)
2.4 Proteomics
19(3)
2.4.1 Gel-Based Protein Separation Techniques
21(1)
2.4.2 Non-Gel Protein Separation Techniques
21(1)
2.5 Analysis of Phytomicrobial Interactions Using Proteomics Approaches
22(4)
2.6 Conclusion and Future Prospects
26(2)
References
28(4)
3 Metagenomics: An Approach to Unravel the Plant Microbiome and Its Function 32(13)
Ravindra Soni
Deep Chandra Suyal
Balram Sahu
Suresh Chandra Phulara
3.1 Introduction
32(1)
3.2 Metagenomics
33(1)
3.3 Metagenomics of Plant Rhizosphere
33(2)
3.4 Metagenomics of Plant Phyllosphere
35(1)
3.5 Metagenomics of Plant Endosphere
36(1)
3.6 In-silico Tools for Metagenome Analysis
37(1)
3.6.1 Mothur
37(1)
3.6.2 Quantitative Insights into Microbial Ecology (QIIME)
37(1)
3.6.3 MEta Genome Analyzer (MEGAN)
38(1)
3.7 Recent Progress in Metagenomic Studies of Plant Microbiome
38(1)
3.8 Conclusion and Future Prospects
38(1)
References
38(7)
4 Combating the Abiotic Stress Through Phytomicrobiome Studies 45(21)
Hemant S. Maheshwari
Abhishek Bharti
Richa Agnihotri
Ajinath Dukare
B. leberlin Prabina
Saurabh Gongola
Mahaveer P. Sharma
4.1 Introduction
45(2)
4.1.1 Abiotic Stress and Phytomicrobiome
45(1)
4.1.2 Role of Signaling in Phytomicrobiome Interactions
46(1)
4.2 Phytomicrobiome Signaling Compounds
47(2)
4.2.1 Root Exudates and Plant Volatiles Compounds
47(1)
4.2.2 Microbial Volatile Organic Compounds
47(1)
4.2.3 Quorum Sensing
48(1)
4.2.4 Underground Phytomicrobiome Signaling
48(1)
4.3 Mechanisms of Phytomicrobiome Associated with Abiotic Stress Tolerance
49(8)
4.3.1 Drought Stress Alleviation
50(3)
4.3.2 Salinity Stress Mitigation
53(2)
4.3.3 Heavy Metal Toxicity
55(1)
4.3.4 Low-Temperature Stress
56(1)
4.3.5 Nutrient Deficiency
56(1)
4.3.6 Flooding or Water Submergence
56(1)
4.4 Importance of Phytomicrobiome Engineering for Crop Stress Alleviation
57(1)
4.5 Omics Strategies in Phytomicrobiome Studies
58(1)
4.6 Conclusion and Future Prospects
59(1)
Acknowledgments
59(1)
References
60(6)
5 Microbial Diversity of Phyllosphere: Exploring the Unexplored 66(25)
Rakhi Dhankhar
Aparajita Mohanty
Pooja Gulati
5.1 Introduction
66(1)
5.2 Origin of Phyllosphere Microflora
67(1)
5.3 Tools to Study Phyllomicrobiome
68(9)
5.3.1 Conventional Methods
69(1)
5.3.2 Microscopic Techniques
69(1)
5.3.3 First-Generation Molecular Techniques
70(1)
5.3.4 Next-Generation Sequencing Methods
70(6)
5.3.5 Omics and Bioinformatics Approaches
76(1)
5.3.6 Other Molecular Methods
77(1)
5.4 Biodiversity of Phyllosphere
77(1)
5.5 Microbial Adaptation to Phyllosphere
78(3)
5.5.1 Adaptation to Abiotic Stresses
79(1)
5.5.2 Adaptation to Biotic Stresses
80(1)
5.5.3 Adaptation to Nutrient Scarcity
81(1)
5.6 Interaction of Phyllomicrobiota with Plants
81(2)
5.6.1 Positive Interactions
82(1)
5.6.2 Negative Interactions
83(1)
5.7 Significance of Phyllomicrobiome Studies
83(1)
5.8 Conclusion and Future Prospects
84(1)
References
85(6)
6 Rhizosphere Engineering: An Effective Approach for Sustainable Modern Agriculture 91(27)
Reema Mishra
Tripti Grover
Pooja Gulati
Aparajita Mohanty
6.1 Introduction
91(1)
6.2 Natural Plant-Microbe Interactions in Rhizosphere
92(1)
6.3 Molecular Mechanisms in Plant-Microbe Interactions in Rhizosphere
93(1)
6.4 Biochemical Components in Rhizosphere Signaling
94(2)
6.5 Tools and Techniques in Rhizosphere Engineering
96(4)
6.5.1 Stable Isotope Probing (SIP)
96(1)
6.5.2 DNA Arrays
97(1)
6.5.3 Fluorescence In Situ Hybridization (FISH)
97(1)
6.5.4 Bioreporters
97(1)
6.5.5 Genomics
98(1)
6.5.6 Transcriptomics
98(1)
6.5.7 Proteomics
99(1)
6.5.8 Metabolomics
99(1)
6.6 Rhizosphere Components Amenable to Engineering
100(7)
6.6.1 Soil Modification
100(1)
6.6.2 Plant Amendment
100(7)
6.6.2.1 Root Exudate Modification
100(1)
6.6.2.2 Root Architecture Modification
101(1)
6.6.2.3 Enhancing Abiotic Stress Tolerance in Plants
101(2)
6.6.2.4 Enhancing Biotic Stress Tolerance in Plants
103(2)
6.6.2.5 Engineering Metabolic Pathways in Plants
105(2)
6.6.3 Engineering Microbial Populations
107(1)
6.7 Conclusion and Future Prospects
107(1)
Acknowledgment
108(1)
References
108(10)
7 Plant Communication with Associated: Its Components, Composition and Role in Maintaining Plant Homeostasis 118(32)
Dibyajit Lahiri
Moupriya Nag
Sayantani Garai
Bandita Dutta
Rina Rani Ray
7.1 Introduction
118(1)
7.2 Biofilm and Rhizospheric Interactions
119(1)
7.3 Biofilm Formation at the Root Rhizosphere
120(5)
7.3.1 The Components of Biofilm Matrix
121(1)
7.3.2 Bacterial Quorum Sensing
122(3)
7.4 Genetic Features Responsible for Bacterial Cell Adhesion to Plant System
125(13)
7.4.1 Chemotaxis Motility
125(1)
7.4.2 Substrate Utilization and Transport
125(1)
7.4.3 Lipopolysaccharide and Membrane Proteins
126(1)
7.4.4 Plant Cell Wall Modification
127(1)
7.4.5 Adhesion and Biofilm Formation
128(1)
7.4.6 Stress Protection
128(1)
7.4.7 Bacterial Secretion System
129(1)
7.4.8 Transcriptional Regulators and Sensor Proteins
130(8)
7.5 Nutrient Interactions
138(2)
7.5.1 Release and Activation of Minerals
138(1)
7.5.2 Nutrient Recycling
138(1)
7.5.3 Nitrogen Dynamics
138(1)
7.5.4 Ionic Modification
139(1)
7.6 Biotic Interaction
140(2)
7.6.1 Symbiosis
140(1)
7.6.2 Synergy
140(1)
7.6.3 Competition
140(1)
7.6.4 Antagonism
141(1)
7.6.5 Pathogenesis
142(1)
7.7 Conclusion and Future Prospects
142(1)
References
143(7)
8 Phytomicrobiome: Synergistic Relationship in Bioremediation of Soil for Sustainable Agriculture 150(14)
Nimmy Srivastava
8.1 Introduction
150(1)
8.2 Phytoremediation
151(1)
8.2.1 Process of Phytoremediation
151(1)
8.2.2 Strategies for Phytoremediation
151(1)
8.3 Phytomicrobe Interactions and Rhizomediation
152(5)
8.3.1 Principle of Phytomicrobiome Interaction During Rhizomediation
152(2)
8.3.2 Removal of Inorganic Contaminants
154(1)
8.3.3 Removal of Organic Pollutants
154(3)
8.3.4 Factors Affecting Rhizomediation
157(1)
8.4 Conclusion and Future Prospects
157(1)
References
158(6)
9 Rhizospheric Biology: Alternate Tactics for Enhancing Sustainable Agriculture 164(23)
Kalpana Bhatt
Pankaj Bhatt
9.1 Introduction
164(1)
9.2 Engineering the Rhizosphere
165(4)
9.2.1 Rhizosphere and Rhizobia
165(2)
9.2.2 Root Exudates: Chemical Nature and Types
167(1)
9.2.3 Factors Affecting Root Exudate
168(1)
9.3 Engineering Soil Microbial Populations and Plant-Microbe Interactions
169(1)
9.3.1 Microorganisms in Soil
169(1)
9.3.2 Soil Modification: Altering Microbial Populations
170(1)
9.4 Plant Growth-Promoting Rhizobacteria: Mechanisms, Potential, and Usages
170(6)
9.4.1 Direct Mechanisms
171(4)
9.4.1.1 Biological N2 Fixation
171(2)
9.4.1.2 Phosphate Solubilization
173(1)
9.4.1.3 Zinc Solubilization
174(1)
9.4.1.4 Siderophore Production
174(1)
9.4.1.5 Production of Phytohormones
174(1)
9.4.1.6 ACC (1-Aminocyclopropane-1-Carboxylate) Deaminase Activity
175(1)
9.4.2 Indirect Mechanisms
175(1)
9.5 Plant-Microbe Interaction
176(1)
9.6 Biofertilizers and its Applications
177(1)
9.7 Plant Genetic Engineering
177(1)
9.8 Conclusion and Future Prospects
178(1)
Acknowledgments
178(1)
References
179(8)
10 Application of Inorganic Amendments to Improve Soil Fertility 187(20)
Sunita Chauhan
Shweta Kulshreshtha
10.1 Introduction
187(1)
10.2 Impact of Bhoochetna Movement in Southern India
188(1)
10.3 Sustainable Agriculture
188(4)
10.3.1 Healthy Soil and Soil Quality
189(1)
10.3.2 Soil Quality
189(1)
10.3.3 Soil Quality Indicator
190(1)
10.3.4 Soil Quality Index
191(1)
10.4 Factors to Be Considered While Selecting a Soil Amendment
192(2)
10.5 Advantages of Soil Amendments
194(1)
10.6 Land Modeling
194(1)
10.7 Major Applications of Soil Amendments
195(7)
10.7.1 Phyto-Stabilization in Polluted or Contaminated Soils
195(1)
10.7.2 Restoration of Soil
196(11)
10.7.2.1 Soil Acidity/pH Soil Amendments
196(1)
10.7.2.2 Mineral Soil Amendments and Conditioners
196(1)
10.7.2.3 Different Types of Inorganic Amendments
197(5)
10.8 Combination Strategy for Soil Quality Improvement
202(1)
10.9 Conclusion and Future Prospects
203(1)
References
203(4)
11 Improved Plant Resistance by Phytomicrobiome Community Towards Biotic and Abiotic Stresses 207(10)
Neha Trivedi
11.1 Introduction
207(1)
11.2 Microbes and Plants
207(2)
11.2.1 Abiotic Stress Responses and Microbe-Mediated Mitigation in Plants
208(1)
11.2.2 Microbial-Induced Response to Stresses
208(1)
11.3 Response of Abiotic Response on Plant
209(2)
11.3.1 Induced Systemic Tolerance (IST)
209(1)
11.3.2 Metabolic Changes in Plants Induced by Microbes During Stress
209(13)
11.3.2.1 Metabolic Cross-Talk in Plants After Stress Induction
210(1)
11.3.2.2 Activation of Antioxidant Mechanism
210(1)
11.3.2.3 Activation of Systemically Induced Resistance
210(1)
11.4 Role of Phytohormones in Increasing Abiotic and Biotic Stress Tolerance
211(1)
11.5 Gene Transfer in Plants
212(1)
11.6 Conclusion and Future Prospects
212(1)
References
212(5)
12 Bioprospecting: At the Interface of Plant and Microbial Communities 217(23)
Madan L. Verma
Varsha Rani
Reena Kumari
Deepka Sharma
Sanjeev Kumar
Rekha Kushwaha
12.1 Introduction
217(1)
12.2 Plant-Associated Microbial Communities
218(4)
12.3 Beneficial Effects of Plant-Associated Microbial Communities
222(4)
12.3.1 Rhizoremediation
223(1)
12.3.2 Plant Growth-Promoting Rhizobacteria (PGPR)
223(1)
12.3.3 Biotic and Abiotic Stress Resistance
224(2)
12.3.4 Signalomics
226(1)
12.4 Role of Microbial Processing (Signals) in Facilitating Plant Growth
226(4)
12.5 Conclusion and Future Prospects
230(1)
Acknowledgments
230(1)
References
231(9)
13 Advances in Omics and Bioinformatics Tools for Phyllosphere Studies 240(14)
Hina Bonsai
13.1 Introduction
240(1)
13.2 Recent Trends and Approaches
241(2)
13.3 Computing for Biology
243(1)
13.4 Bioinformatics in Microbial Research
243(2)
13.5 Phyllosphere Microbiome Studies Based on Genome-Wide Association
245(1)
13.6 Omics Strategies and Their Integration
246(2)
13.6.1 Metagenomics
246(1)
13.6.2 Metatranscriptomics
246(1)
13.6.3 Metabolomics
247(1)
13.6.4 Proteomics
247(1)
13.7 Conclusion and Future Prospects
248(1)
References
248(6)
14 Microbial Mediated Zinc Solubilization in Legumes for Sustainable Agriculture 254(23)
Pawan Saini
Sharon Nagpal
Pooja Saint Arun Kumar
Mudasir Gani
14.1 Introduction
254(1)
14.2 Chronological Events of Zinc Biology
255(1)
14.3 Role of Zinc in Living System
256(3)
14.3.1 Essentiality of Zinc in Humans
256(1)
14.3.2 Essentiality of Zinc in Plants
257(2)
14.4 Zinc Deficiency vs. Zinc Toxicity in Crop Plants
259(1)
14.5 Availability of Zinc in Soil Environment
260(1)
14.6 Factors Affecting Zinc Availability to Plants
261(1)
14.7 Response of Legume Crops to Zinc
262(1)
14.8 Microbial Mediated Zinc Solubilization in Legume Crops
263(3)
14.8.1 Zinc-Solubilizing Bacteria (ZnSB)
264(1)
14.8.2 Zinc-Solubilizing Fungi (ZnSF)
265(1)
14.9 Conclusion and Future Prospects
266(1)
References
266(11)
15 Composition and Interconnections in Phyllomicrobiome 277(16)
Meghmala Waghmode
Aparna Gunjal
Neha Patil
Sonali Shinde
15.1 Introduction
277(2)
15.2 Significance of Phyllospheremicrobiota
279(1)
15.3 Phyllosphere Microorganisms as Plant Growth Regulator
280(5)
15.3.1 Plant Growth Hormones Production by Phyllosphere Microorganisms
280(1)
15.3.2 Phosphorus Solubilization by Phyllosphere Microorganisms
280(1)
15.3.3 Siderophores Production by Phyllosphere Microorganisms
280(1)
15.3.4 Phyllosphere Microorganisms as Biocontrol Agents Against the Phytopathogens
280(1)
15.3.5 Phyllosphere Microorganisms to Reduce Biotic and Abiotic Stress
281(1)
15.3.6 Synthesis of 1-Aminocyclopropane-1-Carboxylate Deaminase (ACC)
282(1)
15.3.7 Phyllosphere Microorganisms in Nitrogen-Fixation
282(1)
15.3.8 Frost Injury and Frost Control by Altering the Phyllosphere Microbiota
282(1)
15.3.9 Remediation of Toxic Pollutants
283(1)
15.3.10 Plant Probiotics
283(1)
15.3.11 Role of Phyllosphere Microorganisms in Climate Change
284(1)
15.3.12 Phyllosphere Microorganisms in Nutrient Yield and Increase of Plant Growth
284(1)
15.3.13 Plant Hormones as Colonization Mediators of the Plant Leaves
284(1)
15.4 Plant-Pathogen Interactions Mediated by Phyllosphere Microbiome
285(1)
15.4.1 Interaction Dependent on the Ionome
285(1)
15.4.2 Role of Secretory Systems and Secretory Products
285(1)
15.4.3 Quorum Sensing
286(1)
15.5 Conclusion and Future Prospects
286(1)
References
286(7)
Index 293
AMIT VERMA is Assistant Professor in the Department of Biochemistry, S.D. Agricultural University, India.

JITENDRA KUMAR SAINI is Assistant Professor in the Department of Microbiology at Central University of Haryana, India.

ABD EL-LATIF HESHAM is Professor of Microbial Genetics and Environmental Meta-Genome Biotechnology at Genetics Department, Faculty of Agriculture, Beni-Suef University, Egypt.

HARIKESH BAHADUR SINGH is Professor of Excellence, Department of Biotechnology, GLA University, Mathura, Uttar Pradesh, India.