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E-raamat: Protein Microarray for Disease Analysis: Methods and Protocols

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Protein microarrays have been used for a wide variety of important tasks, such as identifying protein-protein interactions, discovering disease biomarkers, identifying DNA-binding specificity by protein variants, and for characterization of the humoral immune response.  In Protein Microarray for Disease Analysis: Methods and Protocols, expert researchers provide concise descriptions of the methodologies currently used to fabricate microarrays for the comprehensive analysis of proteins or responses to proteins that can be used to dissect human disease.  These methodologies are the toolbox for revolutionizing drug development and cell-level biochemical understanding of human disease processes.  Beginning with a section on protein-detecting analytical microarrays, the volume continues with sections covering antigen microarrays for immunoprofiling, protein function microarrays, the validation of candidate targets, proteomic libraries, as well as signal detection strategies and data analysis techniques.  Written in the highly successful Methods in Molecular BiologyT series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls. Practical and cutting-edge,  Protein Microarray for Disease Analysis: Methods and Protocols serves as a solid framework to aid scientists in understanding how protein microarray technology is presently developing and how it can be applied to transform our analysis of human disease.

This comprehensive survey of the field sees expert researchers provide concise descriptions of the most up-to-date methodologies used to fabricate microarrays for the analysis of proteins or responses to proteins that help inform our study of human disease.

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From the reviews:

This is a well-illustrated book with concise descriptions of the methodologies currently used to fabricate microarrays for the comprehensive analysis of proteins or responses to proteins that can be used to detect disease. The book is intended for scientists, but it also will be of immense help to graduate students and researchers interested protein microarrays. a well-done resource on the methodologies currently used in protein microarrays to promote a cell-level biochemical understanding of human disease processes that could revolutionize drug development. (Omer Iqbal, Doodys Review Services, July, 2011)

Preface v
Contributors xi
PART I PROTEIN-DETECTING ANALYTICAL MICROARRAYS
1 Detecting and Quantifying Multiple Proteins in Clinical Samples in High-Throughput Using Antibody Microarrays
3(12)
Tanya Knickerbocker
Gavin MacBeath
2 Analysis of Serum Protein Glycosylation with Antibody---Lectin Microarray for High-Throughput Biomarker Screening
15(14)
Chen Li
David M. Lubman
3 Antibody Suspension Bead Arrays
29(8)
Jochen M. Schwenk
Peter Nilsson
4 Reverse Protein Arrays Applied to Host-Pathogen Interaction Studies
37(20)
Victor J. Cid
Ekkehard Kauffmann
Maria Molina
5 Identification and Optimization of DNA Aptamer Binding Regions Using DNA Microarrays
57(10)
Nicholas O. Fischer
Theodore M. Tarasow
6 Recombinant Lectin Microarrays for Glycomic Analysis
67(14)
Daniel C. Propheter
Ku-Lung Hsu
Lara K. Mahal
PART II ANTIGEN MICROARRAYS FOR IMMUNOPROFILING
7 Recombinant Antigen Microarrays for Serum/Plasma Antibody Detection
81(24)
Persis P. Wadia
Bita Sahaf
David B. Miklos
8 SPOT Synthesis as a Tool to Study Protein-Protein Interactions
105(24)
Dirk F.H. Winkler
Heiko Andresen
Kai Hilpert
9 Native Antigen Fractionation Protein Microarrays for Biomarker Discovery
129(20)
Robert J. Caiazzo, Jr.
Dennis J. O'Rourke
Timothy J. Barder
Bryce P. Nelson
Brian C.-S. Liu
10 Immunoprofiling Using NAPPA Protein Microarrays
149(16)
Sahar Sibani
Joshua LaBaer
PART III PROTEIN FUNCTION MICROARRAYS
11 High-Throughput Mammalian Two-Hybrid Screening for Protein---Protein Interactions Using Transfected Cell Arrays (CAPPIA)
165(20)
Andrea Fiebitz
Dominique Vanhecke
12 Protein---Protein Interactions: An Application of Tus-Ter Mediated Protein Microarray System
185(16)
Kalavathy Sitaraman
Deb K. Chatterjee
13 Kinase Substrate Interactions
201(12)
Michael G. Smith
Jason Ptacek
Michael Snyder
14 A Functional Protein Microarray Approach to Characterizing Posttranslational Modifications on Lysine Residues
213(14)
Jun Seop Jeong
Hee-Sool Rho
Heng Zhu
PART IV STRATEGIES FOR VALIDATION OF CANDIDATE TARGETS
15 Multiplexed Detection of Antibodies Using Programmable Bead Arrays
227(12)
Karen S. Anderson
16 A Coprecipitation-Based Validation Methodology for Interactions Identified Using Protein Microarrays
239(18)
Ovidiu Marina
Jonathan S. Duke-Cohan
Catherine J. Wu
PART V GENERATION OF PROTEOMIC LIBRARIES
17 Development of Expression-Ready Constructs for Generation of Proteomic Libraries
257(18)
Charles Yu
Kenneth H. Wan
Ann S. Hammonds
Mark Stapleton
Joseph W. Carbon
Susan E. Celniker
PART VI DETECTION METHODS
18 Reverse Phase Protein Microarrays: Fluorometric and Colorimetric Detection
275(28)
Rosa I. Gallagher
Alessandra Silvestri
Emanuel F. Petricoin III
Lance A. Liotta
Virginia Espina
19 Forster Resonance Energy Transfer Methods for Quantification of Protein-Protein Interactions on Microarrays
303(18)
Michael Schaferling
Stefan Nagl
20 Label-Free Detection with Surface Plasmon Resonance Imaging
321(16)
Christopher Lausted
Zhiyuan Hu
Leroy Hood
PART VII DATA ANALYSIS TECHNIQUES FOR PROTEIN FUNCTION MICROARRAYS
21 Data Processing and Analysis for Protein Microarrays
337(12)
David S. DeLuca
Ovidiu Marina
Surajit Ray
Guang Lan Zhang
Catherine J. Wu
Vladimir Brusic
22 Database Resources for Proteomics-Based Analysis of Cancer
349(16)
Guang Lan Zhang
David S. DeLuca
Vladimir Brusic
Index 365