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E-raamat: Protein Microarrays: Methods and Protocols

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Progress in functional proteomics has been limited for a long time, partially caused by limitations in assay sensitivity and sample capacity; however, protein microarrays have the ability to overcome these limitations so that a highly parallel analysis of hundreds of proteins in thousands of samples is attainable.  In Protein Microarrays: Methods and Protocols, expert researchers in the field present an up-to-date collection of robust strategies in the field of protein microarrays and summarize recent advantages in the field of printing technologies, the development of suitable surface materials, as well as detection and quantification technologies.  Written in the highly successful Methods in Molecular BiologyT series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key notes on troubleshooting and avoiding known pitfalls. Comprehensive and cutting-edge, Protein Microarrays: Methods and Protocols aims to stimulate the application and further advancement of this powerful technology in labs worldwide.

Protein microarrays can overcome the sensitivity and sample limitations of functional proteomics. This volume is an exhaustive and up-to-date presentation of robust protein microarray strategies that furthers the advance of this powerful laboratory technology.
Preface v
Contributors ix
PART I REVERSE PHASE PROTEIN ARRAYS
1 Reverse Phase Protein Microarrays for Clinical Applications
3(10)
Mariaelena Pierobon
Claudio Belluco
Lance A. Liotta
Emanuel F. Petricoin III
2 Impact of Blocking and Detection Chemistries on Antibody Performance for Reverse Phase Protein Arrays
13(10)
Kristi Ambroz
3 Phosphoprotein Stability in Clinical Tissue and Its Relevance for Reverse Phase Protein Microarray Technology
23(22)
Virginia Espina
Claudius Mueller
Lance A. Liotta
4 Utilization of RNAi to Validate Antibodies for Reverse Phase Protein Arrays
45(10)
Heiko Mannsperger
Stefan Uhlmann
Ulrike Korf
Ozgur Sahin
5 Antibody-Mediated Signal Amplification for Reverse Phase Protein Array-Based Protein Quantification
55(10)
Jan C. Brase
Heiko Mannsperger
Holger Sultmann
Ulrike Korf
6 Reverse-Phase Protein Lysate Microarray (RPA) for the Experimental Validation of Quantitative Protein Network Models
65(14)
Satoshi S. Nishizuka
7 Characterization of Kinase Inhibitors Using Reverse Phase Protein Arrays
79(30)
Georg Martiny-Baron
Dorothea Haasen
Daniel D'Dorazio
Johannes Voshol
Doriano Fabbro
8 Use of Formalin-Fixed and Paraffin-Embedded Tissues for Diagnosis and Therapy in Routine Clinical Settings
109(14)
Daniela Berg
Katharina Malinowsky
Bilge Reischauer
Claudia Wolff
Karl-Friedrich Becker
9 Producing Reverse Phase Protein Microarrays from Formalin-Fixed Tissues
123(18)
Claudia Wolff
Christina Schott
Katharina Malinowsky
Daniela Berg
Karl-Friedrich Becker
10 Use of Reverse Phase Protein Microarrays to Study Protein Expression in Leukemia: Technical and Methodological Lessons Learned
141(18)
Steven M. Kornblau
Kevin R. Coombes
PART II ANTIBODY MICROARRAYS
11 Antibody Microarrays as Tools for Biomarker Discovery
159(24)
Marta Sanchez-Carbayo
12 Assessment of Antibody Specificity Using Suspension Bead Arrays
183(8)
Jochen M. Schwenk
Peter Nilsson
13 Quantitative Analysis of Phosphoproteins Using Microspot Immunoassays
191(12)
Frauke Henjes
Frank Gotschel
Anika Jocker
Ulrike Korf
14 Robust Protein Profiling with Complex Antibody Microarrays in a Dual-Colour Mode
203(20)
Christoph Schroder
Mohamed S.S. Alhamdani
Kurt Fellenberg
Andrea Bauer
Anette Jacob
Jorg D. Hoheisel
15 High-Throughput Studies of Protein Glycoforms Using Antibody---Lectin Sandwich Arrays
223(14)
Brian B. Haab
Tingting Yue
16 Microspot Immunoassay-Based Analysis of Plasma Protein Profiles for Biomarker Discovery Strategies
237(10)
Johanna Sonntag
Heiko Mannsperger
Anika Jocker
Ulrike Korf
17 Recombinant Antibodies for the Generation of Antibody Arrays
247(18)
Carl A.K. Borrebaeck
Christer Wingren
PART III PROTEIN MICROARRAYS
18 Producing Protein Microarrays from DNA Microarrays
265(12)
Oda Stoevesandt
Michael J. Taussig
Mingyue He
19 Cell Arrays and High-Content Screening
277(12)
Holger Erfle
Anastasia Eskova
Jurgen Reymann
Vytaute Starkuviene
20 Probing Calmodulin Protein---Protein Interactions Using High-Content Protein Arrays
289(16)
David J. O'Connell
Mikael Bauer
Sara Linse
Dolores J. Cahill
21 Protein Function Microarrays for Customised Systems-Oriented Proteome Analysis
305(26)
Jonathan M. Blackburn
Aubrey Shoko
22 Optimized Autoantibody Profiling on Protein Arrays
331(14)
Sara L. O'Kane
John K. O'Brien
Dolores J. Cahill
PART IV SAMPLE IMMOBILIZATION STRATEGIES
23 Inkjet Printing for the Production of Protein Microarrays
345(18)
Iain McWilliam
Marisa Chong Kwan
Duncan Hall
24 Impact of Substrates for Probe Immobilization
363(16)
Ursula Sauer
25 Contact Printing of Protein Microarrays
379(16)
John Austin
Antonia H. Holway
Index 395