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E-raamat: Protein Modificomics: From Modifications to Clinical Perspectives

Edited by (Associate Professor, Department of Clinical Biochemistry, University of Kashmir, Srinagar, Jammu and Kashmir, India.), Edited by (Professor, Dr. B. R. Ambedkar Center for Biomedical Research, University of Delhi, New Delhi, India.)
  • Formaat: EPUB+DRM
  • Ilmumisaeg: 18-May-2019
  • Kirjastus: Academic Press Inc
  • Keel: eng
  • ISBN-13: 9780128119501
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  • Formaat: EPUB+DRM
  • Ilmumisaeg: 18-May-2019
  • Kirjastus: Academic Press Inc
  • Keel: eng
  • ISBN-13: 9780128119501
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Protein Modificomics: From Modifications to Clinical Perspectives comprehensively deals with all of the most recent aspects of post-translational modification (PTM) of proteins, including discussions on diseases involving PTMs, such as Alzheimer’s, Huntington’s, X-linked spinal muscular atrophy-2, aneurysmal bone cyst, angelman syndrome and OFC10. The book also discusses the role PTMs play in plant physiology and the production of medicinally important primary and secondary metabolites. The understanding of PTMs in plants helps us enhance the production of these metabolites without greatly altering the genome, providing robust eukaryotic systems for the production and isolation of desired products without considerable downstream and isolation processes.

  • Provides thorough insights into the post translational modifications (PTMs) of proteins in both the plant and animal kingdom
  • Presents diagrammatic representations of various protein modification and estimation mechanisms in four-color
  • Includes coverage of diseases involving post translational modifications
Contributors xi
Preface xv
1 Posttranslational Modifications of Proteins and Their Role in Biological Processes and Associated Diseases
Irfan-Ur-Rauf Tak
Fasil Ali
Jehangir Shafi Dar
Aqib Rehman Magray
Bashir A. Ganai
M.Z. Chishti
1 Introduction
1(3)
2 Major Posttranslational Modifications
4(11)
3 Functions of Posttranslational Modifications
15(4)
4 Diseases Associated With Posttranslational Modifications
19(2)
5 Role of Posttranslational Modifications in Protein-Protein Interaction
21(1)
6 Role of PTMs in Replication
22(3)
7 Role of PTMs in Transcription
25(2)
8 Role of PTMs in Translation
27(1)
9 Chemical and Functional Aspects of Protein PTMs
28(1)
10 Role of PTMs in Histone Modification
29(2)
11 Conclusion and Future Prospectus
31(1)
References
32(3)
Further Reading
35(2)
2 Clinical Perspective of Posttranslational Modifications
Iram Ashaq Kawa
Akbar Masood
Shajrul Amin
Mir Faisal Mustafa
Fouzia Rashid
1 Introduction
37(1)
2 Glycosylation
38(5)
3 Acetylation
43(2)
4 Phosphorylation
45(1)
5 Carbonylation
46(1)
6 Methylation
47(2)
7 Hydroxylation
49(2)
8 Nitration
51(1)
9 Sulfation
52(1)
10 Palmitoylation
53(5)
11 Conclusion and Future Perspective
58(1)
References
58(11)
3 Phosphorylation and Acetylation of Proteins as Posttranslational Modification: Implications in Human Health and Associated Diseases
Sana Qausain
Hemalatha Srinivasan
Shazia Jamal
Mohammad Nasiruddin
Mo. Khurshid Alam Khan
1 Introduction
69(1)
2 Phosphorylation
70(7)
3 Protein Acetylation
77(4)
4 Conclusion and Future Prospects
81(1)
References
81(6)
4 Protein Modifications and Lifestyle Disorders
Shivani Arora
Anju Katyal
1 Introduction
87(1)
2 Deregulated Adipocyte Proteomc in Obesity
88(4)
3 Protcostasis in Diabetes
92(2)
4 Protein Modification in Cardiovascular Diseases
94(3)
5 Modified Proceome in Rheumatoid Arthritis
97(4)
6 Conclusion and Future Aspects
101(8)
References 102(6)
Further Reading 108(253)
5 Ubiquitin Mediated Posttranslational Modification of Proteins Involved in Various Signaling Diseases
Lavanya V.
Shazia Jamal
Neesar Ahmed
1 Introduction
109(2)
2 Ubiquitinadon in Inflammatory Pathways
111(1)
3 Implications of UPS in Cancer
112(6)
4 E3 Ligases in Diabetic Retinopathy (DR)
118(1)
5 Implications of UPS in Neurodegenerative Diseases
119(3)
6 Implications of UPS in Renal Disorders
122(1)
7 Conclusion and Future Perspectives
123(2)
References
125(6)
6 Role of Glycosylation in Modulating Therapeutic Efficiency of Protein Pharmaceuticals
Parvaiz Ahmad Dar
Usma Manzoor
Snowber Shabir Wani
Fasil Ali
Tanveer Ali Dar
1 Introduction
131(1)
2 Challenges Associated With Protein Pharmaceuticals
132(2)
3 Protein Glycosylation and Its Pharmacological Significance
134(1)
4 Modulation of Therapeutically Important Properties of Proteins by Glycoengincering
135(4)
5 Conclusion and Future Direction
139(1)
References
140(5)
7 Posttranslational Modification of Heterologous Human Therapeutics in Plant Host Expression Systems
Ayyagari Archana
Lakshna Mahajan
Safikur Rahman
Rinki Minakshi
1 Introduction
145(2)
2 N-Glycosylation as a Major Posttranslational Modification
147(2)
3 Factors Affecting the Natural Glycosylation of Plant-Farmed Human Pharmaceuticals
149(3)
4 Plant Cell Culture Versus Whole Plant Cultivation for Biopharmaceutical Production
152(2)
5 Developing Humanized and Improved Glycoproteins
154(2)
6 Glycoengincering: Concept of "Biobetters" and "Biosimilars"
156(1)
7 Success Stories
157(1)
8 Ebola Virus Infection
158(1)
9 Gaucher's Disease
158(1)
10 Monoclonal Antibodies
158(1)
11 Vaccines
159(1)
12 Benefits of Plant Expression System
159(1)
13 Limitations of Plant Expression System
160(1)
14 Conclusion and Future Prospects
161(1)
References
162(9)
8 Protein Modification in Plants in Response to Abiotic Stress
Hilal Ahmad Qazi
Nelofer Jan
Salika Ramazan
Riffat John
1 Introduction
171(1)
2 Abiotic Stress in Plants
172(2)
3 Types of Abiotic Stress in Plants and the Proteins Involved Therein
174(10)
4 Protein Modification in Plants in Response to Stress
184(5)
5 Conclusion and Future Perspective
189(1)
References
190(9)
Further Reading
199(4)
9 Posttranslational Modifications Associated With Cancer and Their Therapeutic Implications
Aniket Kumar Bansal
Laishram Rajendrakumar Singh
Majid Rasool Kamli
1 Introduction
203(1)
2 Posttranslational Modifications That Regulate the Mdm2-p53 Interaction
204(2)
3 Modification of Retionblastoma Tumor Suppressor Protein (pRB) and Its Association to Cell Cycle Progression
206(1)
4 Regulation of NF-κB by Various Posttranslational Modifications
207(2)
5 Regulation of Gene Expression Via Histone and Histonc Deacetylase Modifications
209(2)
6 Deregulation of Tyrosine Kinase by Posttranslational Modifications
211(1)
7 Posttranslational Modifications in Ras/Raf/MEK/ERK in MAPK Pathway
212(2)
8 Modification of Signal Transducers and Activators of Transcription
214(1)
9 Phosphorylation of Cyclin-Dependent Kinases and Their Therapeutic Implications
215(3)
10 Posttranslational Modification in Cadherins
218(1)
11 Prenylation and G-Protein Coupled Receptors
219(1)
12 Summary and Future Perspectives
220(1)
References
221(8)
10 Nonenzymatic Posttranslational Protein Modifications: Mechanism and Associated Disease Pathologies
Sheeza Khan
Ajaz A. Bhat
1 Introduction
229(1)
2 Carhamylation
230(7)
3 Catbonylation
237(7)
4 N-Homocysteinylation
244(2)
5 S-Nitrosylation
246(7)
6 Glycation
253(9)
7 Summary
262(1)
Acknowledgment
262(1)
References
263(18)
11 Protein Covalent Modification by Homocysteine: Consequences and Clinical Implications
Guwjmayum Suraj Sharma
Reshmee Bhattacharya
Laishram Rajendrakumar Singh
1 Introduction
281(1)
2 Homocysteine and Protein Homocysteinylation
282(1)
3 Protein S-Homocysteinylation
283(2)
4 Protein N-Homocysteinylation
285(7)
5 Homocystinuria/Hyperhomocysteinemia: Condition Persisting for Protein Modifications
292(2)
6 Clinical Complications Associated With Elevated Hey
294(10)
7 Conclusions and Future Prospects
304(1)
References
304(7)
Further Reading
311(2)
12 Posttranslational Modifications in Algae: Role in Stress Response and Biopharmaceutical Production
Parveiz Ahmad
Fareha Bano
1 Introduction
313(1)
2 Posttranslational Modifications in Algae With Respect to Stress Response
314(9)
3 Posttranslational Modification of Therapeutic Proteins in Microalgae
323(7)
4 Conclusion and Future Prospects
330(1)
References
331(6)
Further Reading
337(2)
13 Protein Glycosylation: An Important Tool for Diagnosis or Early Detection of Diseases
Humayra Bashir
Barqul Afaq Wani
Bashir A. Ganai
Shabir Ahmad Mir
1 Introduction
339(1)
2 Protein Posttranslational Modifications and Quest for Clinical Biomarkers
340(1)
3 Protein Glycosylation and Related Disorders
341(5)
4 Technological Approaches in Analysis of Protein Glycosylation
346(4)
5 Conclusions and Future Prospectus
350(1)
References
351(7)
Further Reading
358(3)
Index 361
Dr. Tanveer Ali Dar, affiliated with University of Kashmir, stands as a pioneer in the dynamic and evolving field of osmolyte-protein biology. Holding advanced degrees in his field, Dr. Dar has dedicated his career to advancing scientific knowledge and innovation in osmolyte research. Utilizing a multidisciplinary approach that combines biochemical, biophysical, and molecular biology techniques, Dr. Dar explores the dynamic interplay between osmolytes and proteins at the molecular level. His research sheds light on how osmolytes modulate protein structure and dynamics, enabling cells to adapt and thrive under stressful conditions such as osmotic stress, temperature fluctuations, and disease states. He has to his credit several breakthrough contributions in the area of exploring the osmolyte induced structural-functional integrity of proteins and their implications in protein misfolding disease interventions. Besides focusing on several aspects of osmolyte research, his research particularly emphasizes on understanding the roles of osmolytes and intrinsically disordered proteins in cellular function and disease pathogenesis. His pioneering investigations have shed light on the dynamic interplay between these molecular entities, unraveling fundamental mechanisms underlying cellular resilience and disease progression. Dr. Dar is recognized for his contributions to both theoretical understanding and practical applications in the osmolyte-field, and his work has been published in numerous peer-reviewed international journals. Moreover, he has to his credit a couple of books published by Springer International Ltd., Apple academic Press and Elsevier, USA. Dr. Dar is also a recipient of Indian National Science Academy visiting fellowship and is a member of various international and national scientific societies like ASBMB, Canadian Society of Molecular Biosciences, National Academy of Sciences India, India Biophysical society etc. He is a prolific reviewer, editor and editorial board member of a number of prestigious journals. As an educator, he is committed to nurturing the next generation of scientists, mentoring students and guiding them towards excellence in research.

Prof. Laishram R. Singh is a pioneer in the field of osmolyte research. He has made several landmark contributions in understanding protein folding mechanism by osmolytes and harnessing the basic knowledge in designing strategies for the therapeutic intervention of human diseases caused by protein folding defects. He obtained his doctoral degree (in the year 2006) from Jamia Millia Islamia, New Delhi from where he begins his research on osmoprotectants, unveiling their role in protein folding landscape and thermodynamics of protein folding. He then expanded his expertise during his postdoctoral studies at Fox Chase Cancer Cancer, Philadelphia by employing these molecules for restoring functions to disease causing mutant proteins related to homocystinuria. Nowadays, metabolomic studies has further expanded the repertoire of osmolytic molecules that are upregulated or downregulated under various disease conditions including neurodegenerative diseases. Presently, at the University of Delhi, he is engaged on identifying specific brain osmolytes that could regulate the functional activity of acetylcholinesterase and carbonic anhydrase (important target enzymes of Dementia). He is also interested in using these osmolytes to correct folding defects of some of the folding deficient brain proteins including, A, -synuclein, transthyretin whose toxic inclusions are the emblematic signatures of Dementia. He has published more than 85 articles related to the avenue osmolyte research” in various journals of high international repute. He is a prolific reviewer, guest editors, and is in the editorial board members of prestigious journals.