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Protein Structure by Semidefinite Facial Reduction |
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1 | (11) |
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Ancestry Inference in Complex Admixtures via Variable-Length Markov Chain Linkage Models |
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12 | (17) |
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Charge Group Partitioning in Biomolecular Simulation |
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29 | (15) |
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Increased Methylation Variation in Epigenetic Domains across Cancer Types |
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44 | (1) |
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Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising |
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45 | (15) |
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Quantifying the Dynamics of Coupled Networks of Switches and Oscillators |
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60 | (2) |
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lobSTR: A Short Tandem Repeat Profiler for Personal Genomes |
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62 | (2) |
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Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation Using Sequencing Data |
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64 | (15) |
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Ballast: A Ball-Based Algorithm for Structural Motifs |
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79 | (15) |
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Evolution of Genome Organization by Duplication and Loss: An Alignment Approach |
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94 | (19) |
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LoopWeaver - Loop Modeling by the Weighted Scaling of Verified Proteins |
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113 | (14) |
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A Robust Method for Transcript Quantification with RNA-seq Data |
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127 | (21) |
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Modeling the Breakage-Fusion-Bridge Mechanism: Combinatorics and Cancer Genomics |
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148 | (15) |
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TrueSight: Self-training Algorithm for Splice Junction Detection Using RNA-seq |
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163 | (2) |
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Synthetic Sequence Design for Signal Location Search |
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165 | (15) |
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The Three-Dimensional Architecture of a Bacterial Genome and Its Alteration by Genetic Perturbation |
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180 | (1) |
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Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput Sequencing |
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181 | (2) |
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Network-Based Prediction and Analysis of HIV Dependency Factors |
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183 | (1) |
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Structure-Guided Deimmunization of Therapeutic Proteins |
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184 | (15) |
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Evidence for Widespread Association of Mammalian Splicing and Conserved Long-Range RNA Structures |
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199 | (1) |
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Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly |
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200 | (13) |
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Finding Maximum Colorful Subtrees in Practice |
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213 | (11) |
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Recovering the Tree-Like Trend of Evolution Despite Extensive Lateral Genetic Transfer: A Probabilistic Analysis |
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224 | (15) |
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RESQUE: Network Reduction Using Semi-Markov Random Walk Scores for Efficient Querying of Biological Networks (Extended Abstract) |
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239 | (2) |
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Sayed Mohammad Ebrahim Sahraeian |
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Detecting SNP-Induced Structural Changes in RNA: Application to Disease Studies |
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241 | (3) |
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A Model for Biased Fractionation after Whole Genome Duplication |
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244 | (1) |
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Exact Pattern Matching for RNA Structure Ensembles |
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245 | (16) |
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Reconstructing Boolean Models of Signaling |
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261 | (11) |
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Alignment-Free Sequence Comparison Based on Next Generation Sequencing Reads: Extended Abstract |
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272 | (14) |
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Differential Oestrogen Receptor Binding is Associated with Clinical Outcome in Breast Cancer |
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286 | (1) |
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Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem |
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287 | (15) |
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Function-Function Correlated Multi-Label Protein Function Prediction over Interaction Networks |
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302 | (12) |
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Predicting Protein-Protein Interactions from Multimodal Biological Data Sources via Nonnegative Matrix Tri-Factorization |
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314 | (12) |
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CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping |
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326 | (15) |
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Structure-Based Whole Genome Realignment Reveals Many Novel Non-coding RNAs |
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341 | (1) |
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Probabilistic Inference of Viral Quasispecies Subject to Recombination |
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342 | (13) |
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Simultaneously Learning DNA Motif along with Its Position and Sequence Rank Preferences through EM Algorithm |
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355 | (16) |
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Author Index |
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371 | |