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E-raamat: Rice Protocols

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With the completion of a finished rice genome sequence, increasing efforts have focused on functional characterization of rice genes, elucidation of the underlying mechanisms involved in major agronomic traits (e.g., high yield, grain quality, abiotic stress tolerance, and disease resistance), and the subsequent translation of genomic knowledge into agricultural productivity via molecular breeding and improved cultural practice. To meet increasing interest in this field, Rice Protocols has been compiled to provide a series of core techniques and approaches commonly used in studying rice molecular biology and functional genomics. These approaches include genetic and molecular techniques such as artificial hybridization, fluorescence in situ hybridization, generation and characterization of chemical and T-DNA insertional mutants, quantitative trait loci (QTLs) analysis and map-based cloning, site-specific transgene integration, and artificial microRNA-mediated gene silencing, along with a variety of “omics” techniques. Written in the highly successful Methods in Molecular Biology™ series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

Authoritative and easy to use, Rice Protocols will prove useful for both beginners and experienced researchers whether they are molecular biologists who want to study rice plants or rice researchers who are interested in learning molecular techniques.



Preface v
Contributors ix
1 Rice Artificial Hybridization for Genetic Analysis
1(12)
Xueyan Sha
2 Fluorescence in Situ Hybridization Techniques for Cytogenetic and Genomic Analyses
13(16)
Jason G. Walling
Wenli Zhang
Jiming Jiang
3 Generation of Rice Mutants by Chemical Mutagenesis
29(10)
Thomas H. Tai
4 TILLING and Ecotilling for Rice
39(18)
Jennifer L. Cooper
Steven Henikoff
Luca Comai
Bradley J. Till
5 Functional Characterization of Rice Genes Using a Gene-Indexed T-DNA Insertional Mutant Population
57(12)
Ki-Hong Jung
Gynheung An
6 QTL Analysis and Map-Based Cloning of Salt Tolerance Gene in Rice
69(14)
Ji-Ping Gao
Hong-Xuan Lin
7 Site-Specific Gene Integration in Rice
83(12)
Vibha Srivastava
8 Transcriptome Profiling Analysis Using Rice Oligonucleotide Microarrays
95(14)
Ki-Hong Jung
Pamela C. Ronald
9 Cloning of Small RNAs for the Discovery of Novel MicroRNAs in Plants
109(10)
Guru Jagadeeswaran
Ramanjulu Sunkar
10 Global Identification of Small RNA Targets in Plants by Sequencing Sliced Ends of Messenger RNAs
119(12)
Yong-Fang Li
Ramanjulu Sunkar
11 Artificial MicroRNAs for Specific Gene Silencing in Rice
131(20)
Norman Warthmann
Stephan Ossowski
Rebecca Schwab
Detlef Weigel
12 Rice Proteomic Analysis: Sample Preparation for Protein Identification
151(34)
Ganesh Kumar Agrawal
Nam-Soo Jwa
Young-Ho Jung
Sun Tae Kim
Dea-Wook Kim
Kyoungwon Cho
Junko Shibato
Randeep Rakwal
13 Quantification of Jasmonic and Salicylic Acids in Rice Seedling Leaves
185(16)
Kyoungwon Cho
Oksoo Han
Shigeru Tamogami
Junko Shibato
Akihiro Kubo
Ganesh Kumar Agrawal
Randeep Rakwal
14 Analysis of Insect-Induced Volatiles from Rice
201(8)
Nan Zhao
Xiaofeng Zhuang
Gitika Shrivastava
Feng Chen
15 Phenotypic and Physiological Evaluation for Drought and Salinity Stress Responses in Rice
209(18)
Utlwang Batlang
Niranjan Baisakh
Madana M.R. Ambavaram
Andy Pereira
16 Phenotypic, Physiological, and Molecular Evaluation of Rice Chilling Stress Response at the Vegetative Stage
227(16)
Benildo G. de los Reyes
Song Joong Yun
Venura Herath
Fuyu Xu
Myoung Ryoul Park
Jeong Lee
Ki Young Kim
17 Analysis of Rice Root Hair Morphology Using Cryo-Scanning Electron Microscopy
243(6)
Zhiming Yu
Hanmin Chen
Yanli Tong
Ping Wu
18 Inoculation and Virulence Assay for Bacterial Blight and Bacterial Leaf Streak of Rice
249(8)
Bing Yang
Adam Bogdanove
19 Inoculation and Scoring Methods for Rice Sheath Blight Disease
257(12)
Yulin Jia
Guangjie Liu
Dong-Soo Park
Yinong Yang
20 Molecular Approaches to Improve Rice Abiotic Stress Tolerance
269(16)
Junya Mizoi
Kazuko Yamaguchi-Shinozaki
21 Molecular Strategies to Improve Rice Disease Resistance
285(26)
Emily E. Helliwell
Yinong Yang
22 Molecular Strategies to Engineer Transgenic Rice Seed Compartments for Large-Scale Production of Plant-Made Pharmaceuticals
311(16)
Trevor Greenham
Illimar Altosaar
Appendix 327(6)
Index 333