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E-raamat: Tiling Arrays: Methods and Protocols

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In Tiling Arrays: Methods and Protocols, expert researchers in the field detail many of the methods which are now commonly used to study tiling microarrays in genomic discovery . These include methods and applications for transcriptional regulation, expression, genetic and epigenetic regulation, as well as techniques and skills on tiling microarray data analysis. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls.

Authoritative and practical, Tiling Arrays: Methods and Protocols seeks to provide scientists with a comprehensive and down to earth approach to maximize results.



This book details many of the methods that are now commonly used to study tiling microarrays in genomic discovery. It provides step-by-step detail essential for reproducible results and contains expert implementation advice.
A Brief Introduction to Tiling Microarrays: Principles, Concepts, and
Applications.- Design of Tiling Arrays and their Application to Bacterial
Transcriptome Analysis.- Transcript Profiling in Arabidopsis with Genome
Tiling Microarrays.- Genome-wide Analysis of Transcription Factor Binding
Sites in Skeletal Muscle Cells using ChIP-seq.- Analysis of Allele-Specific
Gene Expression Using a Target-Oriented Tiling Microarray Assay.- Detection
of Epigenetic Alterations Using Tiling Arrays.- Investigating Gene Promoter
Methylation in a Mouse Model of Status Epilepticus.- Integrative Analysis of
ChIP-chip and ChIP-seq Dataset.- HAT: A Novel Statistical Approach to
Discover Functional Regions in the Genome.- Inference of Alternative Splicing
from Tiling Array Data.- Analysis of in vivo Occupancy of Aebp1, a
Transcription Factor, using High Resolution Tiling Array.- Application of the
Simple and Efficient MPeak Modeling in Binding Peak Identification in
CHIP-CHIP Studies.-  Evaluation of MeDIP-chip in the Context of Whole Genome
Bisulphite Sequencing (WGBS-seq) in Arabidopsis.- Mapping Genomic Features of
Tiling Microarray Data by TileMapper.
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