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E-raamat: Protein Structure: Determination, Analysis, and Applications for Drug Discovery

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  • Formaat: EPUB+DRM
  • Ilmumisaeg: 18-Mar-2003
  • Kirjastus: CRC Press Inc
  • Keel: eng
  • ISBN-13: 9781135544058
  • Formaat - EPUB+DRM
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  • Formaat: EPUB+DRM
  • Ilmumisaeg: 18-Mar-2003
  • Kirjastus: CRC Press Inc
  • Keel: eng
  • ISBN-13: 9781135544058

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Organized into four sections, the book covers an introductory chapter on structural genomics; methods for producing proteins in structural studies, experimental approaches for solving structures by crystallography and NMR, and computational strategies for determining structural information; analysis, mostly computational, for understanding proteins from their structures and descriptions of the database repositories of protein structures and the standards used to curate them; and potential uses of protein structure in the drug discovery process. The last section also address structure- based drug design, refining protein pharmaceuticals using structure, and the impact of genetic variation on protein function and pharmacology. Suitable as a reference for the researcher with basic knowledge of protein structure interested in determining, analyzing, and using structural information, particularly in conjunction with a genomics perspective. Annotation (c) Book News, Inc., Portland, OR (booknews.com)

This text offers in-depth perspectives on every aspect of protein structure identification, assessment, characterization, and utilization, for a clear understanding of the diversity of protein shapes, variations in protein function, and structure-based drug design. The authors cover numerous high-throughput technologies as well as computational methods to study protein structures and residues. A valuable reference, this book reflects current trends in the effort to solve new structures arising from genome initiatives, details methods to detect and identify errors in the prediction of protein structural models, and outlines challenges in the conversion of routine processes into high-throughput platforms.
Preface v
Contributors xi
Part I Introduction
Structural Biology and Structural Genomics: A Federal Agency Perspective
1(8)
John C. Norvell
Marvin Cassman
Part II Determination
Producing Proteins
9(18)
Aled M. Edwards
Cheryl H. Arrowsmith
Raymond Hui
Fabien Marino
Alexei Savchenko
Ken Yamazaki
Adelinda Yee
Crystallization of Membrane Proteins
27(28)
R. Michael Garavito
Prospects for High-Throughput Structure Determination by X-Ray Crystallography
55(40)
Frank von Delft
Charles D. Kang
Duncan E. McRee
Prospects for High-Throughput Structure Determination of Proteins by NMR Spectroscopy
95(46)
Ann E. Ferentz
Automated Molecular Replacement
141(26)
Jorge Navaza
Pedro M. Alzari
Comparative Protein Structure Modeling
167(40)
Andras Fiser
Andrej Sali
Rising Accuracy of Protein Secondary Structure Prediction
207(44)
Burkhard Rost
Novel Fold and Ab Initio Methods for Protein Structure Generation
251(26)
David J. Osguthorpe
Part III Analysis
Identifying Errors in Three-Dimensional Protein Models
277(38)
Brian D. Marsden
Ruben A. Abagyan
Comparative Analysis and Evolutionary Classification of Protein Structures
315(34)
Liisa Holm
Automated Genome Functional Annotation for Structural Genomics
349(20)
Sophia Tsoka
Christos A. Ouzounis
The Importance of Structure-Based Function Annotation to Drug Discovery
369(20)
Susan M. Baxter
Stacy Knutson
Jacquelyn S. Fetrow
The Protein Data Bank
389(18)
Helen M. Berman
Philip E. Bourne
John Westbrook
Christine Zardecki
The European Bioinformatics Institute Macromolecular Structure Database (E-MSD)
407(10)
Dimitris Dimitropoulos
Peter A. Keller
Kim Henrick
John Ionides
Eugene Krissinel
Philip McNeil
Sameer S. Velankar
Part IV Applications for Drug Discovery
Molecular Docking in Structure-Based Design
417(36)
Trevor W. Heritage
Use of Pharmacophores in Structure-Based Drug Design
453(30)
Omoshile Clement
Adrea T. Mehl
The Structure of Human Interferon-β-1a (Avonex®) and its Relation to Activity: A Case Study of the Use of Structural Data in the Arena of Protein Pharmaceuticals
483(38)
Adrian Whitty
Michael Karpusas
G-Protein-Coupled Receptors: Diverse Functions and Shared Mechanisms of Action Interpreted Through the Structure of Rhodopsin
521(40)
S. Roy Kimura
Daniel I. Chasman
Functional Assessment of Amino Acid Variation Caused by Single-Nucleotide Polymorphisms: A Structural View
561(32)
Daniel I. Chasman
Index 593
Daniel I. Chasman